miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 37129 0.66 0.736886
Target:  5'- cGGCGCGCaacaugCCGCg-CGGCUUCUGc- -3'
miRNA:   3'- -CCGCGCGga----GGUGgaGCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 39811 0.73 0.323294
Target:  5'- gGGCGCcgggcgguccuccGCCgauggcgCCugCUUGGCCUCCGGc -3'
miRNA:   3'- -CCGCG-------------CGGa------GGugGAGCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 43245 0.7 0.496907
Target:  5'- gGGCGCGCUccaUCCGCCUCaucGCCaUCCu-- -3'
miRNA:   3'- -CCGCGCGG---AGGUGGAGc--CGG-AGGcuc -5'
14620 5' -63.3 NC_003521.1 + 44758 0.69 0.532767
Target:  5'- -uCGCGCCagUCCACCUcgcCGGCCUuCCGc- -3'
miRNA:   3'- ccGCGCGG--AGGUGGA---GCCGGA-GGCuc -5'
14620 5' -63.3 NC_003521.1 + 45412 0.83 0.081013
Target:  5'- cGGcCGUgGCCUCCACCuccUCGGCCUCCGAu -3'
miRNA:   3'- -CC-GCG-CGGAGGUGG---AGCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 46399 0.67 0.653826
Target:  5'- uGGCGuCGCagaUgCGucCCUCGGCCUCCu-- -3'
miRNA:   3'- -CCGC-GCGg--AgGU--GGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 52374 0.69 0.560257
Target:  5'- aGGCGCGUCauccugaCCGCCgucgCGGCCUUCu-- -3'
miRNA:   3'- -CCGCGCGGa------GGUGGa---GCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 52798 0.69 0.551045
Target:  5'- cGGUGCGgCUCCACCUgGaccGCCUUCa-- -3'
miRNA:   3'- -CCGCGCgGAGGUGGAgC---CGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 54060 0.69 0.532767
Target:  5'- cGC-CGCCUCCGCCgauGCCgCCGAGc -3'
miRNA:   3'- cCGcGCGGAGGUGGagcCGGaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 54712 0.66 0.745825
Target:  5'- gGGCGCGCacauggagAUCUUGGCCgagaggUCCGAGa -3'
miRNA:   3'- -CCGCGCGgagg----UGGAGCCGG------AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 55018 0.68 0.616234
Target:  5'- aGGCGCaGCg-CCAgCgUCGGCggCUCCGAGa -3'
miRNA:   3'- -CCGCG-CGgaGGU-GgAGCCG--GAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 55658 0.66 0.745825
Target:  5'- aGGUGCGCCaCCucguCgUCGGgCCccaCCGAGa -3'
miRNA:   3'- -CCGCGCGGaGGu---GgAGCC-GGa--GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 56050 0.67 0.663203
Target:  5'- aGGCGCGCguugCC-CCagaucaCGGCCUCCGu- -3'
miRNA:   3'- -CCGCGCGga--GGuGGa-----GCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 56917 0.71 0.42876
Target:  5'- aGCGCcgcagcaccGCCUCCagcACCUCGGCCUCg--- -3'
miRNA:   3'- cCGCG---------CGGAGG---UGGAGCCGGAGgcuc -5'
14620 5' -63.3 NC_003521.1 + 57574 0.66 0.718785
Target:  5'- cGCGCGCCUUCgagggcGCCggCGGCgaaccCCGAGu -3'
miRNA:   3'- cCGCGCGGAGG------UGGa-GCCGga---GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 58935 0.66 0.736886
Target:  5'- gGGCuGCGCCucgaacUCCACCa-GGCCcUCUGGc -3'
miRNA:   3'- -CCG-CGCGG------AGGUGGagCCGG-AGGCUc -5'
14620 5' -63.3 NC_003521.1 + 60559 0.67 0.653826
Target:  5'- uGCGCGCCuacuUCCcCCUgCGGUacaCCGAGg -3'
miRNA:   3'- cCGCGCGG----AGGuGGA-GCCGga-GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 62857 0.66 0.718785
Target:  5'- aGGUGUGCC-CCGCCUCaGCauccCUCCcGGu -3'
miRNA:   3'- -CCGCGCGGaGGUGGAGcCG----GAGGcUC- -5'
14620 5' -63.3 NC_003521.1 + 63250 0.71 0.45369
Target:  5'- cGGCGcCGCCaccuuugacgagUCCuuCCUCGGCgaCCGGGu -3'
miRNA:   3'- -CCGC-GCGG------------AGGu-GGAGCCGgaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 66570 0.67 0.635034
Target:  5'- uGGCGCGCCagCGCaaCGuGCgUCUGAGc -3'
miRNA:   3'- -CCGCGCGGagGUGgaGC-CGgAGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.