miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 167 0.69 0.51471
Target:  5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3'
miRNA:   3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 2355 0.73 0.323969
Target:  5'- gGGcCGCGUCUCCGCC-CcGCCcgCCGAGg -3'
miRNA:   3'- -CC-GCGCGGAGGUGGaGcCGGa-GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 3652 0.73 0.330787
Target:  5'- cGGcCGcCGCCgUCUGCCUCGGCggCCGGGa -3'
miRNA:   3'- -CC-GC-GCGG-AGGUGGAGCCGgaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 5321 0.68 0.597475
Target:  5'- cGGCGUGCC-CCGCC--GGCCgcgacUCCGGc -3'
miRNA:   3'- -CCGCGCGGaGGUGGagCCGG-----AGGCUc -5'
14620 5' -63.3 NC_003521.1 + 7099 0.68 0.616234
Target:  5'- cGGCgGCGuCCUCCuuCUCcaGGCCgCUGAGg -3'
miRNA:   3'- -CCG-CGC-GGAGGugGAG--CCGGaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 7405 0.67 0.672559
Target:  5'- aGGC-CGUCggagCCACCggGGCCaggagCCGAGa -3'
miRNA:   3'- -CCGcGCGGa---GGUGGagCCGGa----GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 13802 0.71 0.436981
Target:  5'- aGGCGCGUUUCCACgUCaGCgUCgGGGu -3'
miRNA:   3'- -CCGCGCGGAGGUGgAGcCGgAGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 16889 0.67 0.644434
Target:  5'- cGGC-CGCCUCgACCcccUCGGCCgcgCCu-- -3'
miRNA:   3'- -CCGcGCGGAGgUGG---AGCCGGa--GGcuc -5'
14620 5' -63.3 NC_003521.1 + 17250 0.67 0.644434
Target:  5'- aGGCGCGCCguaUUCACCUgaauaCGGauuuaUCUCCGGa -3'
miRNA:   3'- -CCGCGCGG---AGGUGGA-----GCC-----GGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 17723 0.66 0.709636
Target:  5'- cGGC-CGCCaUCCcgcagAUCUacgcacguucgcUGGCCUCCGAGu -3'
miRNA:   3'- -CCGcGCGG-AGG-----UGGA------------GCCGGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 18094 0.67 0.657579
Target:  5'- cGGCGCgcgagaugagcgGCCUCaACCUggugauccgcacgccCGGCCgcaCCGAGg -3'
miRNA:   3'- -CCGCG------------CGGAGgUGGA---------------GCCGGa--GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 18187 0.67 0.680955
Target:  5'- uGCGCGCCUgCCgGCCcuucgaucacaugUCGGCCgCgGAGu -3'
miRNA:   3'- cCGCGCGGA-GG-UGG-------------AGCCGGaGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 19751 0.66 0.718785
Target:  5'- cGGCGUcggGCUUCCACUUCaGCCaCCGc- -3'
miRNA:   3'- -CCGCG---CGGAGGUGGAGcCGGaGGCuc -5'
14620 5' -63.3 NC_003521.1 + 24464 0.67 0.672559
Target:  5'- cGCGCggaccacggGCCUCaCACCcucggUGGCCaCCGAGa -3'
miRNA:   3'- cCGCG---------CGGAG-GUGGa----GCCGGaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 24681 0.7 0.478518
Target:  5'- uGUGCGCCcagguggccuuccUCUGCCgCGGCCUCCGc- -3'
miRNA:   3'- cCGCGCGG-------------AGGUGGaGCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 28325 0.66 0.691181
Target:  5'- cGGCGCgGCCUgcggaCCGCCggUGGCCgauagCGAGu -3'
miRNA:   3'- -CCGCG-CGGA-----GGUGGa-GCCGGag---GCUC- -5'
14620 5' -63.3 NC_003521.1 + 29357 0.68 0.629393
Target:  5'- uGCGC-CCUgCGCCUCauGGCCUgccccgaccgcgaggCCGAGg -3'
miRNA:   3'- cCGCGcGGAgGUGGAG--CCGGA---------------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 30082 0.67 0.681887
Target:  5'- -aUGUGCC-CCGCCaCGGCCuacgauUCCGGGa -3'
miRNA:   3'- ccGCGCGGaGGUGGaGCCGG------AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 31739 0.66 0.72787
Target:  5'- cGGCcacCGCCUCCGCCgccucgacCGGCacaUCgGGGu -3'
miRNA:   3'- -CCGc--GCGGAGGUGGa-------GCCGg--AGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 36084 0.68 0.624692
Target:  5'- cGGCgGCGCCUCCAucaccacCCUCGccacCCUCCc-- -3'
miRNA:   3'- -CCG-CGCGGAGGU-------GGAGCc---GGAGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.