miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 240716 0.69 0.51471
Target:  5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3'
miRNA:   3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 240038 0.73 0.323294
Target:  5'- gGGCGCcgggcgguccuccGCCgauggcgCCugCUUGGCCUCCGGc -3'
miRNA:   3'- -CCGCG-------------CGGa------GGugGAGCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 236374 0.72 0.381426
Target:  5'- aGGCgGUGCCUucagaUCGCCUCGGgcguUCUCCGGGa -3'
miRNA:   3'- -CCG-CGCGGA-----GGUGGAGCC----GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 234450 0.68 0.616234
Target:  5'- cGGCGCcCCUCCGcgaccCCgacCGGCCccUCUGGGa -3'
miRNA:   3'- -CCGCGcGGAGGU-----GGa--GCCGG--AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 234193 0.68 0.606847
Target:  5'- aGCGgGCCaagcgUUCGCgCgCGGCCUCCGAa -3'
miRNA:   3'- cCGCgCGG-----AGGUG-GaGCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 226071 0.71 0.420632
Target:  5'- aGGCGCGCCcCgGCCgCGGCCggcCCGu- -3'
miRNA:   3'- -CCGCGCGGaGgUGGaGCCGGa--GGCuc -5'
14620 5' -63.3 NC_003521.1 + 223666 0.71 0.420632
Target:  5'- cGCuGCGCCUCgGCCUCGcGCCgcugCUGGa -3'
miRNA:   3'- cCG-CGCGGAGgUGGAGC-CGGa---GGCUc -5'
14620 5' -63.3 NC_003521.1 + 223588 1.1 0.001015
Target:  5'- cGGCGCGCCUCCACCUCGGCCUCCGAGa -3'
miRNA:   3'- -CCGCGCGGAGGUGGAGCCGGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 220184 0.7 0.505775
Target:  5'- aGGCGC-CCaCCAgCgcgCGGCuCUCCGAGc -3'
miRNA:   3'- -CCGCGcGGaGGUgGa--GCCG-GAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 219809 0.72 0.359103
Target:  5'- uGGCGUuaC-CCGCCUCcaGGcCCUCCGAGa -3'
miRNA:   3'- -CCGCGcgGaGGUGGAG--CC-GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 212729 0.66 0.736886
Target:  5'- gGGCGaGCg-CCugCUCGGCUUCCc-- -3'
miRNA:   3'- -CCGCgCGgaGGugGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 211180 0.68 0.597475
Target:  5'- aGGCGcCGCgCUCgGUCUCGuCCUCUGAGg -3'
miRNA:   3'- -CCGC-GCG-GAGgUGGAGCcGGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 210367 0.66 0.72787
Target:  5'- aGGUGCGCgUCaucggcacCCUCGGCCgCCuGGa -3'
miRNA:   3'- -CCGCGCGgAGgu------GGAGCCGGaGGcUC- -5'
14620 5' -63.3 NC_003521.1 + 209195 0.69 0.560257
Target:  5'- gGGCGC-UUUCCACCUacCGGCCaUCCGc- -3'
miRNA:   3'- -CCGCGcGGAGGUGGA--GCCGG-AGGCuc -5'
14620 5' -63.3 NC_003521.1 + 209020 0.72 0.396815
Target:  5'- cGGCGCucaaacGCCUCUA-CUCGGCCUUcugCGAGu -3'
miRNA:   3'- -CCGCG------CGGAGGUgGAGCCGGAG---GCUC- -5'
14620 5' -63.3 NC_003521.1 + 207287 0.67 0.672559
Target:  5'- cGGC-CGCCUUUACUucaUCGGCCUCa--- -3'
miRNA:   3'- -CCGcGCGGAGGUGG---AGCCGGAGgcuc -5'
14620 5' -63.3 NC_003521.1 + 206459 0.67 0.653826
Target:  5'- uGGUGCGCaacgCCcaggACCUgGGCCUCaCGGc -3'
miRNA:   3'- -CCGCGCGga--GG----UGGAgCCGGAG-GCUc -5'
14620 5' -63.3 NC_003521.1 + 206306 0.67 0.635034
Target:  5'- cGCGCGUCUCgGCCcgCGGCCgcuaCCu-- -3'
miRNA:   3'- cCGCGCGGAGgUGGa-GCCGGa---GGcuc -5'
14620 5' -63.3 NC_003521.1 + 206145 0.68 0.606847
Target:  5'- cGCGCaggaggacuGCCUCUACgagcUGGCCUCCGAc -3'
miRNA:   3'- cCGCG---------CGGAGGUGga--GCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 205004 0.7 0.478518
Target:  5'- cGGCGCGCaccgccagguucuCgcccacgCCGCCguagUCGGCCUUCGGGu -3'
miRNA:   3'- -CCGCGCG-------------Ga------GGUGG----AGCCGGAGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.