miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 145261 0.7 0.462173
Target:  5'- aGgGCGCCUCCucgGCCUCGGCggCCa-- -3'
miRNA:   3'- cCgCGCGGAGG---UGGAGCCGgaGGcuc -5'
14620 5' -63.3 NC_003521.1 + 131460 0.73 0.344736
Target:  5'- aGGcCGCGCuCUCgGCCucgUCGGCCUCCu-- -3'
miRNA:   3'- -CC-GCGCG-GAGgUGG---AGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 219809 0.72 0.359103
Target:  5'- uGGCGUuaC-CCGCCUCcaGGcCCUCCGAGa -3'
miRNA:   3'- -CCGCGcgGaGGUGGAG--CC-GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 123344 0.72 0.389071
Target:  5'- cGGCcccaGCGCCgCgGCCgUGGCCUCCGAc -3'
miRNA:   3'- -CCG----CGCGGaGgUGGaGCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 88434 0.71 0.415799
Target:  5'- uGCGCGUCUCCagggagacgucguccGCCUCGGCgUCgGGc -3'
miRNA:   3'- cCGCGCGGAGG---------------UGGAGCCGgAGgCUc -5'
14620 5' -63.3 NC_003521.1 + 226071 0.71 0.420632
Target:  5'- aGGCGCGCCcCgGCCgCGGCCggcCCGu- -3'
miRNA:   3'- -CCGCGCGGaGgUGGaGCCGGa--GGCuc -5'
14620 5' -63.3 NC_003521.1 + 223666 0.71 0.420632
Target:  5'- cGCuGCGCCUCgGCCUCGcGCCgcugCUGGa -3'
miRNA:   3'- cCG-CGCGGAGgUGGAGC-CGGa---GGCUc -5'
14620 5' -63.3 NC_003521.1 + 56917 0.71 0.42876
Target:  5'- aGCGCcgcagcaccGCCUCCagcACCUCGGCCUCg--- -3'
miRNA:   3'- cCGCG---------CGGAGG---UGGAGCCGGAGgcuc -5'
14620 5' -63.3 NC_003521.1 + 63250 0.71 0.45369
Target:  5'- cGGCGcCGCCaccuuugacgagUCCuuCCUCGGCgaCCGGGu -3'
miRNA:   3'- -CCGC-GCGG------------AGGu-GGAGCCGgaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 149181 0.73 0.330787
Target:  5'- cGGCGCGCgucgCCACCggCGGCCa-CGAGg -3'
miRNA:   3'- -CCGCGCGga--GGUGGa-GCCGGagGCUC- -5'
14620 5' -63.3 NC_003521.1 + 3652 0.73 0.330787
Target:  5'- cGGcCGcCGCCgUCUGCCUCGGCggCCGGGa -3'
miRNA:   3'- -CC-GC-GCGG-AGGUGGAGCCGgaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 240038 0.73 0.323294
Target:  5'- gGGCGCcgggcgguccuccGCCgauggcgCCugCUUGGCCUCCGGc -3'
miRNA:   3'- -CCGCG-------------CGGa------GGugGAGCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 45412 0.83 0.081013
Target:  5'- cGGcCGUgGCCUCCACCuccUCGGCCUCCGAu -3'
miRNA:   3'- -CC-GCG-CGGAGGUGG---AGCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 204525 0.76 0.213605
Target:  5'- gGGUGCGCC-CCACC-CGGCCUCguuuuucugcuuaCGGGg -3'
miRNA:   3'- -CCGCGCGGaGGUGGaGCCGGAG-------------GCUC- -5'
14620 5' -63.3 NC_003521.1 + 73151 0.76 0.214088
Target:  5'- cGGCgGCGgCgCCGCCUCGGCCUgCGAc -3'
miRNA:   3'- -CCG-CGCgGaGGUGGAGCCGGAgGCUc -5'
14620 5' -63.3 NC_003521.1 + 115397 0.75 0.273211
Target:  5'- gGGCGCggGCggCCGCCaCGGCCUCCGGa -3'
miRNA:   3'- -CCGCG--CGgaGGUGGaGCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 146841 0.74 0.285274
Target:  5'- gGGgGCGCCUCguCCUCG-CCUCCGc- -3'
miRNA:   3'- -CCgCGCGGAGguGGAGCcGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 148522 0.74 0.285274
Target:  5'- cGGCuGCGCCUCCuCC-CGcGCCUuccCCGAGg -3'
miRNA:   3'- -CCG-CGCGGAGGuGGaGC-CGGA---GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 152774 0.74 0.287736
Target:  5'- cGGCGuCGCCUCCugcgccuugcgcaccGCCUCGGUCaCCGGc -3'
miRNA:   3'- -CCGC-GCGGAGG---------------UGGAGCCGGaGGCUc -5'
14620 5' -63.3 NC_003521.1 + 73623 0.73 0.317258
Target:  5'- cGGCGCGCCUgCCAgCCcaagcagaaGGCCUCCGc- -3'
miRNA:   3'- -CCGCGCGGA-GGU-GGag-------CCGGAGGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.