miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 153438 0.8 0.120561
Target:  5'- cGGCGUcaccuccgccgccucGuCCUCCACCUCGGCCUCCu-- -3'
miRNA:   3'- -CCGCG---------------C-GGAGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 24681 0.7 0.478518
Target:  5'- uGUGCGCCcagguggccuuccUCUGCCgCGGCCUCCGc- -3'
miRNA:   3'- cCGCGCGG-------------AGGUGGaGCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 167 0.69 0.51471
Target:  5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3'
miRNA:   3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 184195 0.66 0.745825
Target:  5'- uGGUGCGCUUCUucg-UGGaCCUCUGGGa -3'
miRNA:   3'- -CCGCGCGGAGGuggaGCC-GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 174504 0.74 0.304149
Target:  5'- aGGCG-GCCUCCACggCUUGGaucaCCUCCGGGu -3'
miRNA:   3'- -CCGCgCGGAGGUG--GAGCC----GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 179094 0.73 0.317258
Target:  5'- uGCGCGCCUCCuguACCagucccgCGGCUUCCGu- -3'
miRNA:   3'- cCGCGCGGAGG---UGGa------GCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 2355 0.73 0.323969
Target:  5'- gGGcCGCGUCUCCGCC-CcGCCcgCCGAGg -3'
miRNA:   3'- -CC-GCGCGGAGGUGGaGcCGGa-GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 128620 0.73 0.351868
Target:  5'- aGCaGCGCCUCCGCUUCGGacacgcgccCCUCCa-- -3'
miRNA:   3'- cCG-CGCGGAGGUGGAGCC---------GGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 209020 0.72 0.396815
Target:  5'- cGGCGCucaaacGCCUCUA-CUCGGCCUUcugCGAGu -3'
miRNA:   3'- -CCGCG------CGGAGGUgGAGCCGGAG---GCUC- -5'
14620 5' -63.3 NC_003521.1 + 88460 0.7 0.47074
Target:  5'- gGGCGCGCCgCC-CCggcCGGCC-CCaGAGc -3'
miRNA:   3'- -CCGCGCGGaGGuGGa--GCCGGaGG-CUC- -5'
14620 5' -63.3 NC_003521.1 + 176954 0.71 0.412596
Target:  5'- cGGCGCGCCgccucgUCCACCUgugucagGGCCUUgGAc -3'
miRNA:   3'- -CCGCGCGG------AGGUGGAg------CCGGAGgCUc -5'
14620 5' -63.3 NC_003521.1 + 153177 0.72 0.389071
Target:  5'- gGGCuGCGCCUCCAgCCUgugcgaGGCCUgCGGc -3'
miRNA:   3'- -CCG-CGCGGAGGU-GGAg-----CCGGAgGCUc -5'
14620 5' -63.3 NC_003521.1 + 91930 0.78 0.178286
Target:  5'- cGGCGCuCCUCgGCgUCGGCCacggCCGAGg -3'
miRNA:   3'- -CCGCGcGGAGgUGgAGCCGGa---GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 136368 0.71 0.418211
Target:  5'- aGGaUGCGCugcgacuuccuacaCUCCACCUCGGCCg-CGGGc -3'
miRNA:   3'- -CC-GCGCG--------------GAGGUGGAGCCGGagGCUC- -5'
14620 5' -63.3 NC_003521.1 + 128373 0.76 0.214088
Target:  5'- gGGCGCGCCcaccagggCCGCCUgGGCCgcCUGAGc -3'
miRNA:   3'- -CCGCGCGGa-------GGUGGAgCCGGa-GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 236374 0.72 0.381426
Target:  5'- aGGCgGUGCCUucagaUCGCCUCGGgcguUCUCCGGGa -3'
miRNA:   3'- -CCG-CGCGGA-----GGUGGAGCC----GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 13802 0.71 0.436981
Target:  5'- aGGCGCGUUUCCACgUCaGCgUCgGGGu -3'
miRNA:   3'- -CCGCGCGGAGGUGgAGcCGgAGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 184369 0.7 0.479386
Target:  5'- uGGCgcgGCGCCUCUcggACCUgggccacgaggCGGCCUUCGAc -3'
miRNA:   3'- -CCG---CGCGGAGG---UGGA-----------GCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 169168 0.74 0.279191
Target:  5'- uGGUGCGCCgcUCCAaCUCGGCCUCgGu- -3'
miRNA:   3'- -CCGCGCGG--AGGUgGAGCCGGAGgCuc -5'
14620 5' -63.3 NC_003521.1 + 39811 0.73 0.323294
Target:  5'- gGGCGCcgggcgguccuccGCCgauggcgCCugCUUGGCCUCCGGc -3'
miRNA:   3'- -CCGCG-------------CGGa------GGugGAGCCGGAGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.