miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 72144 0.67 0.681887
Target:  5'- aGGaCG-GCCUgCCACCagGGaCCUCCGGc -3'
miRNA:   3'- -CC-GCgCGGA-GGUGGagCC-GGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 72318 0.66 0.736886
Target:  5'- uGGCGuCGCCgu--CCUCcGCCUCCGu- -3'
miRNA:   3'- -CCGC-GCGGagguGGAGcCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 73151 0.76 0.214088
Target:  5'- cGGCgGCGgCgCCGCCUCGGCCUgCGAc -3'
miRNA:   3'- -CCG-CGCgGaGGUGGAGCCGGAgGCUc -5'
14620 5' -63.3 NC_003521.1 + 73623 0.73 0.317258
Target:  5'- cGGCGCGCCUgCCAgCCcaagcagaaGGCCUCCGc- -3'
miRNA:   3'- -CCGCGCGGA-GGU-GGag-------CCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 75572 0.66 0.709636
Target:  5'- aGCGC-CCUCCuguCCUCGuCCUCCu-- -3'
miRNA:   3'- cCGCGcGGAGGu--GGAGCcGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 75996 0.66 0.726965
Target:  5'- cGGC-CGCCgguUCCuCCUCccccgcgGGCgCUCCGGGa -3'
miRNA:   3'- -CCGcGCGG---AGGuGGAG-------CCG-GAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 76393 0.66 0.736886
Target:  5'- cGGCGC-CCUCCACCUUGccgauguagcGCUUCUu-- -3'
miRNA:   3'- -CCGCGcGGAGGUGGAGC----------CGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 80908 0.69 0.532767
Target:  5'- cGGCgGCGCCUCCucuuCCUCGuuCgCCGAa -3'
miRNA:   3'- -CCG-CGCGGAGGu---GGAGCcgGaGGCUc -5'
14620 5' -63.3 NC_003521.1 + 80992 0.68 0.615295
Target:  5'- -uCGCGCCUCCgcgcagcGCCUcaCGGCCggUCCGuGa -3'
miRNA:   3'- ccGCGCGGAGG-------UGGA--GCCGG--AGGCuC- -5'
14620 5' -63.3 NC_003521.1 + 81169 0.69 0.51471
Target:  5'- gGGUGCGCCguuggUCCacgcaccagGCCUCGGCgaUCUGGGc -3'
miRNA:   3'- -CCGCGCGG-----AGG---------UGGAGCCGg-AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 83772 0.68 0.616234
Target:  5'- uGGCgGCGCCccCCGCCgCGcuCCUCCGAc -3'
miRNA:   3'- -CCG-CGCGGa-GGUGGaGCc-GGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 84694 0.69 0.551045
Target:  5'- uGCGUGCa--CACCUccaggcCGGCCUCCGGu -3'
miRNA:   3'- cCGCGCGgagGUGGA------GCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 86696 0.66 0.691181
Target:  5'- uGGCGCuGCCgCCcuuGCC-CGGCCg-CGAGa -3'
miRNA:   3'- -CCGCG-CGGaGG---UGGaGCCGGagGCUC- -5'
14620 5' -63.3 NC_003521.1 + 88003 0.66 0.700433
Target:  5'- gGGCGCGCgacgccgagCUguaCCACCUgcCGGUgaCCGAGg -3'
miRNA:   3'- -CCGCGCG---------GA---GGUGGA--GCCGgaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 88434 0.71 0.415799
Target:  5'- uGCGCGUCUCCagggagacgucguccGCCUCGGCgUCgGGc -3'
miRNA:   3'- cCGCGCGGAGG---------------UGGAGCCGgAGgCUc -5'
14620 5' -63.3 NC_003521.1 + 88460 0.7 0.47074
Target:  5'- gGGCGCGCCgCC-CCggcCGGCC-CCaGAGc -3'
miRNA:   3'- -CCGCGCGGaGGuGGa--GCCGGaGG-CUC- -5'
14620 5' -63.3 NC_003521.1 + 88745 0.66 0.745825
Target:  5'- cGGCGCaCg-UCGCCgUGGuCCUCCGAGa -3'
miRNA:   3'- -CCGCGcGgaGGUGGaGCC-GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 91930 0.78 0.178286
Target:  5'- cGGCGCuCCUCgGCgUCGGCCacggCCGAGg -3'
miRNA:   3'- -CCGCGcGGAGgUGgAGCCGGa---GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 94961 0.66 0.736886
Target:  5'- cGGCGcCGCCcgCCGCCg-GGCC-CaGAGa -3'
miRNA:   3'- -CCGC-GCGGa-GGUGGagCCGGaGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 95192 0.68 0.616234
Target:  5'- cGGCGCGgaaCUCCACgCcCGGCa-CCGGGu -3'
miRNA:   3'- -CCGCGCg--GAGGUG-GaGCCGgaGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.