miRNA display CGI


Results 41 - 60 of 773 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 3' -60.1 NC_003521.1 + 57460 0.66 0.815219
Target:  5'- aGC-GGAACCGGCcccaGUAGCcgugGCAGUgGCa -3'
miRNA:   3'- -CGuCCUUGGUCGc---CGUCG----CGUCGgCG- -5'
14621 3' -60.1 NC_003521.1 + 136922 0.66 0.804375
Target:  5'- --uGGGACCAGgGGCgccAGCGUgacugggaguuccuGGCaCGCg -3'
miRNA:   3'- cguCCUUGGUCgCCG---UCGCG--------------UCG-GCG- -5'
14621 3' -60.1 NC_003521.1 + 43145 0.66 0.823388
Target:  5'- gGCGuGGAggugcacgcGCUGGUGGCGcUGCuGCCGCa -3'
miRNA:   3'- -CGU-CCU---------UGGUCGCCGUcGCGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 52588 0.66 0.83925
Target:  5'- cGCGGGcAGCUGGUGGCccgaaaGGCcgGCAGUaCGCu -3'
miRNA:   3'- -CGUCC-UUGGUCGCCG------UCG--CGUCG-GCG- -5'
14621 3' -60.1 NC_003521.1 + 203712 0.66 0.83925
Target:  5'- cCAGuAGCgA-CGGCAGCaGCAGCCGg -3'
miRNA:   3'- cGUCcUUGgUcGCCGUCG-CGUCGGCg -5'
14621 3' -60.1 NC_003521.1 + 240471 0.66 0.83925
Target:  5'- cGCAGGcGCCGccucCGGCAGCucacGCuugguuGGCCGUu -3'
miRNA:   3'- -CGUCCuUGGUc---GCCGUCG----CG------UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 32631 0.66 0.815219
Target:  5'- uGCAGuu-CCGucaucGCGGCGGCGCAGaCGa -3'
miRNA:   3'- -CGUCcuuGGU-----CGCCGUCGCGUCgGCg -5'
14621 3' -60.1 NC_003521.1 + 40586 0.66 0.846169
Target:  5'- aGCAuGAGCguguugaacauggUAGUGcGcCGGUGCAGCCGCu -3'
miRNA:   3'- -CGUcCUUG-------------GUCGC-C-GUCGCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 143540 0.66 0.831401
Target:  5'- cGCGcGccGCCGGCGaCgAGCaGCAGCCGCc -3'
miRNA:   3'- -CGU-CcuUGGUCGCcG-UCG-CGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 25541 0.66 0.806899
Target:  5'- -aGGGAGagcgaCGGCGgacgcuguuguGCAG-GCGGCCGCg -3'
miRNA:   3'- cgUCCUUg----GUCGC-----------CGUCgCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 131215 0.66 0.83925
Target:  5'- -gAGGGGCCGGCGcCAGagacaGC-GUCGCg -3'
miRNA:   3'- cgUCCUUGGUCGCcGUCg----CGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 120563 0.66 0.831401
Target:  5'- uGCuuuuuGGGugUcgaGGCGaugcaCGGCGCGGCCGCc -3'
miRNA:   3'- -CGu----CCUugG---UCGCc----GUCGCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 201191 0.66 0.823388
Target:  5'- aGUGGGcgcaacgagaGGCCGGCGGUcugcucccgcugGGC-CGGCCGUa -3'
miRNA:   3'- -CGUCC----------UUGGUCGCCG------------UCGcGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 209760 0.66 0.806899
Target:  5'- --nGGAguACCGGCuGGCAGUGgAGCgaGCu -3'
miRNA:   3'- cguCCU--UGGUCG-CCGUCGCgUCGg-CG- -5'
14621 3' -60.1 NC_003521.1 + 38712 0.66 0.815219
Target:  5'- cGCGGGcguCCuGGUGGCgcuacuuaAGCGCGuGCUGCc -3'
miRNA:   3'- -CGUCCuu-GG-UCGCCG--------UCGCGU-CGGCG- -5'
14621 3' -60.1 NC_003521.1 + 132595 0.66 0.823388
Target:  5'- --uGGAAgCGGCGGCgucGGCGU--CCGCa -3'
miRNA:   3'- cguCCUUgGUCGCCG---UCGCGucGGCG- -5'
14621 3' -60.1 NC_003521.1 + 190589 0.66 0.806899
Target:  5'- aGCAGuucaccAGCCAGCGGUAacuccaCaCAGCCGCa -3'
miRNA:   3'- -CGUCc-----UUGGUCGCCGUc-----GcGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 92243 0.66 0.846929
Target:  5'- aCGGGcGCCGcGCGGUcuuuuGGC-CGGUCGCg -3'
miRNA:   3'- cGUCCuUGGU-CGCCG-----UCGcGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 31869 0.66 0.830607
Target:  5'- gGCGcGGuGCgAGCGGUAcCGCaccgccaGGCCGCg -3'
miRNA:   3'- -CGU-CCuUGgUCGCCGUcGCG-------UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 28303 0.66 0.823388
Target:  5'- aCGaGAG-CAGCGGCagcgaccccGGCGCGGCCuGCg -3'
miRNA:   3'- cGUcCUUgGUCGCCG---------UCGCGUCGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.