miRNA display CGI

Results 21 - 40 of 773 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
14621	3'	-60.1	NC_003521.1	+	132595	0.66	0.823388
	Target:  5'- --uGGAAgCGGCGGCgucGGCGU--CCGCa -3' miRNA:   3'- cguCCUUgGUCGCCG---UCGCGucGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	190589	0.66	0.806899
	Target:  5'- aGCAGuucaccAGCCAGCGGUAacuccaCaCAGCCGCa -3' miRNA:   3'- -CGUCc-----UUGGUCGCCGUc-----GcGUCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	25541	0.66	0.806899
	Target:  5'- -aGGGAGagcgaCGGCGgacgcuguuguGCAG-GCGGCCGCg -3' miRNA:   3'- cgUCCUUg----GUCGC-----------CGUCgCGUCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	136922	0.66	0.804375
	Target:  5'- --uGGGACCAGgGGCgccAGCGUgacugggaguuccuGGCaCGCg -3' miRNA:   3'- cguCCUUGGUCgCCG---UCGCG--------------UCG-GCG- -5'
14621	3'	-60.1	NC_003521.1	+	205139	0.66	0.831401
	Target:  5'- -uGGuGAACCAG-GGCcGgGUGGCCGUg -3' miRNA:   3'- cgUC-CUUGGUCgCCGuCgCGUCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	43145	0.66	0.823388
	Target:  5'- gGCGuGGAggugcacgcGCUGGUGGCGcUGCuGCCGCa -3' miRNA:   3'- -CGU-CCU---------UGGUCGCCGUcGCGuCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	57460	0.66	0.815219
	Target:  5'- aGC-GGAACCGGCcccaGUAGCcgugGCAGUgGCa -3' miRNA:   3'- -CGuCCUUGGUCGc---CGUCG----CGUCGgCG- -5'
14621	3'	-60.1	NC_003521.1	+	74136	0.66	0.806899
	Target:  5'- uGCAGGAcgacguggcgcGCCAcGgGGCccaGguGCCGCu -3' miRNA:   3'- -CGUCCU-----------UGGU-CgCCGucgCguCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	221255	0.66	0.823388
	Target:  5'- -aGGGAacACCAGCcaGCAGa--AGCCGCa -3' miRNA:   3'- cgUCCU--UGGUCGc-CGUCgcgUCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	66279	0.66	0.831401
	Target:  5'- aGCAGGAGggaGGCGGacuGGCGggcaCAGCCGa -3' miRNA:   3'- -CGUCCUUgg-UCGCCg--UCGC----GUCGGCg -5'
14621	3'	-60.1	NC_003521.1	+	234077	0.66	0.815219
	Target:  5'- cGCccuGGGACU--CGGCgAGCGCuGGCUGCg -3' miRNA:   3'- -CGu--CCUUGGucGCCG-UCGCG-UCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	113356	0.66	0.826612
	Target:  5'- aGgGGGAcggGCCGGgGGCgaggaggaggguuacGGCGgAcGCCGCg -3' miRNA:   3'- -CgUCCU---UGGUCgCCG---------------UCGCgU-CGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	72830	0.66	0.831401
	Target:  5'- aGCAGGcucaccgcgacGGCCuGgGGCGGCGaCGGUagGCa -3' miRNA:   3'- -CGUCC-----------UUGGuCgCCGUCGC-GUCGg-CG- -5'
14621	3'	-60.1	NC_003521.1	+	71971	0.66	0.831401
	Target:  5'- uGCAGauGAGCC--CGGCGuccgugacGCGCAGCuCGCu -3' miRNA:   3'- -CGUC--CUUGGucGCCGU--------CGCGUCG-GCG- -5'
14621	3'	-60.1	NC_003521.1	+	32631	0.66	0.815219
	Target:  5'- uGCAGuu-CCGucaucGCGGCGGCGCAGaCGa -3' miRNA:   3'- -CGUCcuuGGU-----CGCCGUCGCGUCgGCg -5'
14621	3'	-60.1	NC_003521.1	+	118927	0.66	0.815219
	Target:  5'- cGC-GGcgUgGGCGGCGGCGUcccgucagGGCCaGCg -3' miRNA:   3'- -CGuCCuuGgUCGCCGUCGCG--------UCGG-CG- -5'
14621	3'	-60.1	NC_003521.1	+	226046	0.66	0.804375
	Target:  5'- aGCAGc-ACCAGCaccucggccacgaaGGC-GCGCcccGGCCGCg -3' miRNA:   3'- -CGUCcuUGGUCG--------------CCGuCGCG---UCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	201003	0.66	0.806899
	Target:  5'- aGCAGGcGCCAuCGGCggaggaccgcccGGCGCcccGCCGa -3' miRNA:   3'- -CGUCCuUGGUcGCCG------------UCGCGu--CGGCg -5'
14621	3'	-60.1	NC_003521.1	+	120563	0.66	0.831401
	Target:  5'- uGCuuuuuGGGugUcgaGGCGaugcaCGGCGCGGCCGCc -3' miRNA:   3'- -CGu----CCUugG---UCGCc----GUCGCGUCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	58804	0.66	0.823388
	Target:  5'- cGCAuagacGGucuCgAGCaGGCAGCGCguggcGGCCGUg -3' miRNA:   3'- -CGU-----CCuu-GgUCG-CCGUCGCG-----UCGGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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