miRNA display CGI

Results 1 - 20 of 773 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
14621	3'	-60.1	NC_003521.1	+	118927	0.66	0.815219
	Target:  5'- cGC-GGcgUgGGCGGCGGCGUcccgucagGGCCaGCg -3' miRNA:   3'- -CGuCCuuGgUCGCCGUCGCG--------UCGG-CG- -5'
14621	3'	-60.1	NC_003521.1	+	57460	0.66	0.815219
	Target:  5'- aGC-GGAACCGGCcccaGUAGCcgugGCAGUgGCa -3' miRNA:   3'- -CGuCCUUGGUCGc---CGUCG----CGUCGgCG- -5'
14621	3'	-60.1	NC_003521.1	+	136922	0.66	0.804375
	Target:  5'- --uGGGACCAGgGGCgccAGCGUgacugggaguuccuGGCaCGCg -3' miRNA:   3'- cguCCUUGGUCgCCG---UCGCG--------------UCG-GCG- -5'
14621	3'	-60.1	NC_003521.1	+	209760	0.66	0.806899
	Target:  5'- --nGGAguACCGGCuGGCAGUGgAGCgaGCu -3' miRNA:   3'- cguCCU--UGGUCG-CCGUCGCgUCGg-CG- -5'
14621	3'	-60.1	NC_003521.1	+	213720	0.66	0.815219
	Target:  5'- -gGGGAugcccaGCCAGaCGGCGcCGCagaaGGCCGUg -3' miRNA:   3'- cgUCCU------UGGUC-GCCGUcGCG----UCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	226046	0.66	0.804375
	Target:  5'- aGCAGc-ACCAGCaccucggccacgaaGGC-GCGCcccGGCCGCg -3' miRNA:   3'- -CGUCcuUGGUCG--------------CCGuCGCG---UCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	201003	0.66	0.806899
	Target:  5'- aGCAGGcGCCAuCGGCggaggaccgcccGGCGCcccGCCGa -3' miRNA:   3'- -CGUCCuUGGUcGCCG------------UCGCGu--CGGCg -5'
14621	3'	-60.1	NC_003521.1	+	6073	0.66	0.806899
	Target:  5'- -aGGGAaugcgacgGCCGguGCGGCGGCGUu-CCGCc -3' miRNA:   3'- cgUCCU--------UGGU--CGCCGUCGCGucGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	38712	0.66	0.815219
	Target:  5'- cGCGGGcguCCuGGUGGCgcuacuuaAGCGCGuGCUGCc -3' miRNA:   3'- -CGUCCuu-GG-UCGCCG--------UCGCGU-CGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	25541	0.66	0.806899
	Target:  5'- -aGGGAGagcgaCGGCGgacgcuguuguGCAG-GCGGCCGCg -3' miRNA:   3'- cgUCCUUg----GUCGC-----------CGUCgCGUCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	129683	0.66	0.822578
	Target:  5'- cGCAGGAGCUgucgacgGGCGaggacgcccGCuucuGC-CGGCCGCg -3' miRNA:   3'- -CGUCCUUGG-------UCGC---------CGu---CGcGUCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	74136	0.66	0.806899
	Target:  5'- uGCAGGAcgacguggcgcGCCAcGgGGCccaGguGCCGCu -3' miRNA:   3'- -CGUCCU-----------UGGU-CgCCGucgCguCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	143912	0.66	0.806899
	Target:  5'- cCAGGAgACgGGCa-CGGCGC-GCCGCa -3' miRNA:   3'- cGUCCU-UGgUCGccGUCGCGuCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	92243	0.66	0.846929
	Target:  5'- aCGGGcGCCGcGCGGUcuuuuGGC-CGGUCGCg -3' miRNA:   3'- cGUCCuUGGU-CGCCG-----UCGcGUCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	190589	0.66	0.806899
	Target:  5'- aGCAGuucaccAGCCAGCGGUAacuccaCaCAGCCGCa -3' miRNA:   3'- -CGUCc-----UUGGUCGCCGUc-----GcGUCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	121116	0.66	0.823388
	Target:  5'- gGUGGGGuguucgcuguACUGGgGGCcGCGCAGCaugaGCa -3' miRNA:   3'- -CGUCCU----------UGGUCgCCGuCGCGUCGg---CG- -5'
14621	3'	-60.1	NC_003521.1	+	89013	0.66	0.815219
	Target:  5'- cGCGGGccccACCGGCgccacGGCGGUGaguuccucGCCGCu -3' miRNA:   3'- -CGUCCu---UGGUCG-----CCGUCGCgu------CGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	56962	0.66	0.820954
	Target:  5'- uCAGGAGaaAGCGGUagaugcgcgAGUGCaggcucuccucgauGGCCGCg -3' miRNA:   3'- cGUCCUUggUCGCCG---------UCGCG--------------UCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	234077	0.66	0.815219
	Target:  5'- cGCccuGGGACU--CGGCgAGCGCuGGCUGCg -3' miRNA:   3'- -CGu--CCUUGGucGCCG-UCGCG-UCGGCG- -5'
14621	3'	-60.1	NC_003521.1	+	32631	0.66	0.815219
	Target:  5'- uGCAGuu-CCGucaucGCGGCGGCGCAGaCGa -3' miRNA:   3'- -CGUCcuuGGU-----CGCCGUCGCGUCgGCg -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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