miRNA display CGI


Results 1 - 20 of 773 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 3' -60.1 NC_003521.1 + 58 0.71 0.524919
Target:  5'- --cGGAACCGguuuccGCGGCGGCGUgcggcgGGCCGg -3'
miRNA:   3'- cguCCUUGGU------CGCCGUCGCG------UCGGCg -5'
14621 3' -60.1 NC_003521.1 + 101 0.8 0.18443
Target:  5'- uGCAGGGagGCCgaAGCGGCGGcCGgAGCCGUg -3'
miRNA:   3'- -CGUCCU--UGG--UCGCCGUC-GCgUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 431 0.7 0.601278
Target:  5'- gGCgAGGccaAGCCGGCGGUaAGC-CAGCCGg -3'
miRNA:   3'- -CG-UCC---UUGGUCGCCG-UCGcGUCGGCg -5'
14621 3' -60.1 NC_003521.1 + 776 0.66 0.806899
Target:  5'- aGCAGGcGCCAuCGGCggaggaccgcccGGCGCcccGCCGa -3'
miRNA:   3'- -CGUCCuUGGUcGCCG------------UCGCGu--CGGCg -5'
14621 3' -60.1 NC_003521.1 + 964 0.66 0.815219
Target:  5'- aGUGGGcgcaacgagaGGCCGGCGGUcugcucccgugGGC-CGGCCGUa -3'
miRNA:   3'- -CGUCC----------UUGGUCGCCG-----------UCGcGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 1310 0.72 0.479073
Target:  5'- cGCuacGGcGCCGGCGacGUGGCGCGGCUGUa -3'
miRNA:   3'- -CGu--CCuUGGUCGC--CGUCGCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 5313 0.69 0.669232
Target:  5'- cGCGGGGG-CGGCGuGCcccGC-CGGCCGCg -3'
miRNA:   3'- -CGUCCUUgGUCGC-CGu--CGcGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 5497 0.74 0.370313
Target:  5'- gGCAGaaacACCAGaGGCGGUGUAGCCGUc -3'
miRNA:   3'- -CGUCcu--UGGUCgCCGUCGCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 5514 0.75 0.355139
Target:  5'- gGCAGGAguAgCAGCagcgacggugacGGCagccGGCGCGGCCGCc -3'
miRNA:   3'- -CGUCCU--UgGUCG------------CCG----UCGCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 6066 0.66 0.846929
Target:  5'- cGCAGGGcgugaucacGCCAGCcguugcagaGGCAccaacggucGUGCgAGUCGCg -3'
miRNA:   3'- -CGUCCU---------UGGUCG---------CCGU---------CGCG-UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 6073 0.66 0.806899
Target:  5'- -aGGGAaugcgacgGCCGguGCGGCGGCGUu-CCGCc -3'
miRNA:   3'- cgUCCU--------UGGU--CGCCGUCGCGucGGCG- -5'
14621 3' -60.1 NC_003521.1 + 6397 0.7 0.58195
Target:  5'- cGCAGcuACC-GCGGCGGCGacgggucuuGCCGCc -3'
miRNA:   3'- -CGUCcuUGGuCGCCGUCGCgu-------CGGCG- -5'
14621 3' -60.1 NC_003521.1 + 6478 0.67 0.772265
Target:  5'- aCGGGAGgCAGgucCGGCAGCGgaGGCgGUg -3'
miRNA:   3'- cGUCCUUgGUC---GCCGUCGCg-UCGgCG- -5'
14621 3' -60.1 NC_003521.1 + 7088 0.75 0.355139
Target:  5'- aGCAG--ACgCGGCGGCGGCGUccuccuucuccaGGCCGCu -3'
miRNA:   3'- -CGUCcuUG-GUCGCCGUCGCG------------UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 7426 0.76 0.298908
Target:  5'- cCAGGAGCCgAGaCGGCAGCGgCAGCUcCg -3'
miRNA:   3'- cGUCCUUGG-UC-GCCGUCGC-GUCGGcG- -5'
14621 3' -60.1 NC_003521.1 + 7654 0.7 0.630409
Target:  5'- gGCGGccGCCA-CGGCGGCGCGGacaGCg -3'
miRNA:   3'- -CGUCcuUGGUcGCCGUCGCGUCgg-CG- -5'
14621 3' -60.1 NC_003521.1 + 7747 0.75 0.362671
Target:  5'- aGCGgcGGAGgCGGCGGCAGUcccaGCAgacGCCGCa -3'
miRNA:   3'- -CGU--CCUUgGUCGCCGUCG----CGU---CGGCG- -5'
14621 3' -60.1 NC_003521.1 + 7994 0.71 0.534294
Target:  5'- gGCGGGGgagguACCGG-GGCAGCGCcguagcuccAGaCCGCc -3'
miRNA:   3'- -CGUCCU-----UGGUCgCCGUCGCG---------UC-GGCG- -5'
14621 3' -60.1 NC_003521.1 + 8039 0.76 0.291738
Target:  5'- gGCGuuGaGAACCAGCugcugagGGCAGCGCAGaCCGUa -3'
miRNA:   3'- -CGU--C-CUUGGUCG-------CCGUCGCGUC-GGCG- -5'
14621 3' -60.1 NC_003521.1 + 8146 0.66 0.846929
Target:  5'- gGUAGGucugCAGCGGUacAGUGCAGUuacggCGCg -3'
miRNA:   3'- -CGUCCuug-GUCGCCG--UCGCGUCG-----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.