miRNA display CGI


Results 1 - 20 of 773 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 3' -60.1 NC_003521.1 + 240650 0.8 0.18443
Target:  5'- uGCAGGGagGCCgaAGCGGCGGcCGgAGCCGUg -3'
miRNA:   3'- -CGUCCU--UGG--UCGCCGUC-GCgUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 240607 0.71 0.524919
Target:  5'- --cGGAACCGguuuccGCGGCGGCGUgcggcgGGCCGg -3'
miRNA:   3'- cguCCUUGGU------CGCCGUCGCG------UCGGCg -5'
14621 3' -60.1 NC_003521.1 + 240471 0.66 0.83925
Target:  5'- cGCAGGcGCCGccucCGGCAGCucacGCuugguuGGCCGUu -3'
miRNA:   3'- -CGUCCuUGGUc---GCCGUCG----CG------UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 239748 0.67 0.788971
Target:  5'- cCAGGggUCGcGCGGCgagagcuGGCGCAGgUCGg -3'
miRNA:   3'- cGUCCuuGGU-CGCCG-------UCGCGUC-GGCg -5'
14621 3' -60.1 NC_003521.1 + 239456 0.69 0.688509
Target:  5'- uCGGGGA-CAGCGGUGGCccGCGGCgCGUu -3'
miRNA:   3'- cGUCCUUgGUCGCCGUCG--CGUCG-GCG- -5'
14621 3' -60.1 NC_003521.1 + 239363 0.84 0.092691
Target:  5'- aGCGGGAugcccgugugcuGCCAcCGGCGGCGCAGCuCGCg -3'
miRNA:   3'- -CGUCCU------------UGGUcGCCGUCGCGUCG-GCG- -5'
14621 3' -60.1 NC_003521.1 + 239322 0.7 0.610976
Target:  5'- cCAGGAucacCCAGgGuuGGCGCAGUCGUc -3'
miRNA:   3'- cGUCCUu---GGUCgCcgUCGCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 239223 0.66 0.846929
Target:  5'- aCAGGcGCUGGUGGauguGGCGCugcacGGCCGUc -3'
miRNA:   3'- cGUCCuUGGUCGCCg---UCGCG-----UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 238523 0.7 0.598373
Target:  5'- aGCAGGugcgagagcucgucGGCCAGCgGGUAGagGUGGCCGUc -3'
miRNA:   3'- -CGUCC--------------UUGGUCG-CCGUCg-CGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 238455 0.72 0.488092
Target:  5'- cGCAGGGcgGCCucGGCgGGCGGgGCGGagaCGCg -3'
miRNA:   3'- -CGUCCU--UGG--UCG-CCGUCgCGUCg--GCG- -5'
14621 3' -60.1 NC_003521.1 + 238384 0.68 0.716145
Target:  5'- cGCGGGGAUgaacgugCAG-GGCgucccAGCGgGGCCGCu -3'
miRNA:   3'- -CGUCCUUG-------GUCgCCG-----UCGCgUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 238088 0.67 0.789838
Target:  5'- aGCAGcAGCCAGCcagcgaGGCGGUGaCGGCgcuccCGCa -3'
miRNA:   3'- -CGUCcUUGGUCG------CCGUCGC-GUCG-----GCG- -5'
14621 3' -60.1 NC_003521.1 + 237179 0.69 0.669232
Target:  5'- gGCAGa---CGGCGGCGGcCGUGGCaCGCu -3'
miRNA:   3'- -CGUCcuugGUCGCCGUC-GCGUCG-GCG- -5'
14621 3' -60.1 NC_003521.1 + 236465 0.71 0.553216
Target:  5'- cGCGGGccgcgaugagcgAACCGcCGGCGGCGguGgCGCc -3'
miRNA:   3'- -CGUCC------------UUGGUcGCCGUCGCguCgGCG- -5'
14621 3' -60.1 NC_003521.1 + 236167 0.66 0.806899
Target:  5'- gGCGGGAcCUAGCGGacgaugGGUGgGGUgGCa -3'
miRNA:   3'- -CGUCCUuGGUCGCCg-----UCGCgUCGgCG- -5'
14621 3' -60.1 NC_003521.1 + 235498 0.7 0.58195
Target:  5'- cGCcGGAGuCgCGGcCGGCGGgGCAcGCCGCc -3'
miRNA:   3'- -CGuCCUU-G-GUC-GCCGUCgCGU-CGGCG- -5'
14621 3' -60.1 NC_003521.1 + 235274 0.68 0.726495
Target:  5'- --cGGAACaacgauggCGGCGGCcGCGCcGGCUGCc -3'
miRNA:   3'- cguCCUUG--------GUCGCCGuCGCG-UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 234665 0.71 0.524919
Target:  5'- cCAGGAGCCGGagcCGGCGCAuugGCUGCa -3'
miRNA:   3'- cGUCCUUGGUCgccGUCGCGU---CGGCG- -5'
14621 3' -60.1 NC_003521.1 + 234077 0.66 0.815219
Target:  5'- cGCccuGGGACU--CGGCgAGCGCuGGCUGCg -3'
miRNA:   3'- -CGu--CCUUGGucGCCG-UCGCG-UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 233619 0.68 0.714254
Target:  5'- gGCGGGGugCucgagggcaauuucAGCGGCGGCGCcGUacuggaGCu -3'
miRNA:   3'- -CGUCCUugG--------------UCGCCGUCGCGuCGg-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.