miRNA display CGI


Results 1 - 20 of 773 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 3' -60.1 NC_003521.1 + 224559 1.13 0.000953
Target:  5'- aGCAGGAACCAGCGGCAGCGCAGCCGCa -3'
miRNA:   3'- -CGUCCUUGGUCGCCGUCGCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 103646 0.86 0.075716
Target:  5'- aGCGGGGGCagcuCGGCGGCGGCcgcuGCGGCCGCg -3'
miRNA:   3'- -CGUCCUUG----GUCGCCGUCG----CGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 39135 0.84 0.092691
Target:  5'- aGCGGGAugcccgugugcuGCCAcCGGCGGCGCAGCuCGCg -3'
miRNA:   3'- -CGUCCU------------UGGUcGCCGUCGCGUCG-GCG- -5'
14621 3' -60.1 NC_003521.1 + 239363 0.84 0.092691
Target:  5'- aGCGGGAugcccgugugcuGCCAcCGGCGGCGCAGCuCGCg -3'
miRNA:   3'- -CGUCCU------------UGGUcGCCGUCGCGUCG-GCG- -5'
14621 3' -60.1 NC_003521.1 + 120237 0.83 0.116082
Target:  5'- gGCAGGAGCCGGCGGCcGCGCcguGCauCGCc -3'
miRNA:   3'- -CGUCCUUGGUCGCCGuCGCGu--CG--GCG- -5'
14621 3' -60.1 NC_003521.1 + 101978 0.83 0.118998
Target:  5'- -uGGGGuCCAGCaGGCGGUGCAGCUGCg -3'
miRNA:   3'- cgUCCUuGGUCG-CCGUCGCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 60696 0.81 0.14139
Target:  5'- cGCGGGGGacCCGGgGGCGGCGCGgGUCGCa -3'
miRNA:   3'- -CGUCCUU--GGUCgCCGUCGCGU-CGGCG- -5'
14621 3' -60.1 NC_003521.1 + 98465 0.81 0.148465
Target:  5'- -gAGGAGgCGGCGGCGGCcgcgGCGGCCGUg -3'
miRNA:   3'- cgUCCUUgGUCGCCGUCG----CGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 226891 0.81 0.155861
Target:  5'- uGCGGGGGCaccaCGGCGGcCAGCGCGGCCuccGCg -3'
miRNA:   3'- -CGUCCUUG----GUCGCC-GUCGCGUCGG---CG- -5'
14621 3' -60.1 NC_003521.1 + 123577 0.81 0.159682
Target:  5'- gGCGGGAu--GGCGGCGGCGCcgggAGCCGCc -3'
miRNA:   3'- -CGUCCUuggUCGCCGUCGCG----UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 73140 0.81 0.159682
Target:  5'- gGCGGGGGCagCGGCGGCGGCGCcgccucGGCCuGCg -3'
miRNA:   3'- -CGUCCUUG--GUCGCCGUCGCG------UCGG-CG- -5'
14621 3' -60.1 NC_003521.1 + 17001 0.8 0.171658
Target:  5'- aGCAGGcGCCcgcgguGGCGGCGGCGCAGgcCCGUc -3'
miRNA:   3'- -CGUCCuUGG------UCGCCGUCGCGUC--GGCG- -5'
14621 3' -60.1 NC_003521.1 + 240650 0.8 0.18443
Target:  5'- uGCAGGGagGCCgaAGCGGCGGcCGgAGCCGUg -3'
miRNA:   3'- -CGUCCU--UGG--UCGCCGUC-GCgUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 150664 0.8 0.18443
Target:  5'- gGCGGcucuCCGGCGGCGGCGCcGCUGCu -3'
miRNA:   3'- -CGUCcuu-GGUCGCCGUCGCGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 40423 0.8 0.18443
Target:  5'- uGCAGGGagGCCgaAGCGGCGGcCGgAGCCGUg -3'
miRNA:   3'- -CGUCCU--UGG--UCGCCGUC-GCgUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 101 0.8 0.18443
Target:  5'- uGCAGGGagGCCgaAGCGGCGGcCGgAGCCGUg -3'
miRNA:   3'- -CGUCCU--UGG--UCGCCGUC-GCgUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 84416 0.79 0.188871
Target:  5'- uGUAGGuGACCAGCGGCAGgGUGGCgaaGCg -3'
miRNA:   3'- -CGUCC-UUGGUCGCCGUCgCGUCGg--CG- -5'
14621 3' -60.1 NC_003521.1 + 131095 0.79 0.188871
Target:  5'- cGCGGGcuCCGGacggcggGGCGGCGCGGCUGCc -3'
miRNA:   3'- -CGUCCuuGGUCg------CCGUCGCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 168530 0.79 0.188871
Target:  5'- aGCAGG--CUGGCGGcCAGCGCGGCgGCg -3'
miRNA:   3'- -CGUCCuuGGUCGCC-GUCGCGUCGgCG- -5'
14621 3' -60.1 NC_003521.1 + 31907 0.79 0.198034
Target:  5'- aCAGGAACU-GCGGCAG-GCAGCgCGCg -3'
miRNA:   3'- cGUCCUUGGuCGCCGUCgCGUCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.