miRNA display CGI


Results 21 - 40 of 773 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 3' -60.1 NC_003521.1 + 226367 0.79 0.207583
Target:  5'- cGCGGGAG-CGGCGGCuGaCGCcGCCGCa -3'
miRNA:   3'- -CGUCCUUgGUCGCCGuC-GCGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 129996 0.79 0.212505
Target:  5'- cGCugc-GCCGGCGGCGGCGCgcaacGGCCGCu -3'
miRNA:   3'- -CGuccuUGGUCGCCGUCGCG-----UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 137276 0.78 0.21601
Target:  5'- aGCGGGGGCCccAGCgaccuggagcugcgGGUGGCGCGGCUGCu -3'
miRNA:   3'- -CGUCCUUGG--UCG--------------CCGUCGCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 149747 0.78 0.217527
Target:  5'- gGCAGGucuUCuGCGGCgAGgGCGGCCGCg -3'
miRNA:   3'- -CGUCCuu-GGuCGCCG-UCgCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 195190 0.78 0.217527
Target:  5'- cGC-GGAGCCGGCGGCGGU--GGCCGUc -3'
miRNA:   3'- -CGuCCUUGGUCGCCGUCGcgUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 136708 0.78 0.233205
Target:  5'- aGCAGGAcgccGCCgaGGaUGGCAGCGC-GCCGCc -3'
miRNA:   3'- -CGUCCU----UGG--UC-GCCGUCGCGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 222241 0.78 0.238638
Target:  5'- cGCAGGAACCAGuCGaGC-GCGCucuccAGCUGCg -3'
miRNA:   3'- -CGUCCUUGGUC-GC-CGuCGCG-----UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 99950 0.78 0.238638
Target:  5'- cGCAGGGG--GGCGGCGGCGCcucGGCCGa -3'
miRNA:   3'- -CGUCCUUggUCGCCGUCGCG---UCGGCg -5'
14621 3' -60.1 NC_003521.1 + 110687 0.78 0.244176
Target:  5'- cGguGGcGgCAGCGGCGGCGCcGCCGa -3'
miRNA:   3'- -CguCCuUgGUCGCCGUCGCGuCGGCg -5'
14621 3' -60.1 NC_003521.1 + 103113 0.78 0.244176
Target:  5'- gGCAGGcgaagagcuGGCgCAGCGcGCGGCGguGCUGCa -3'
miRNA:   3'- -CGUCC---------UUG-GUCGC-CGUCGCguCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 43470 0.78 0.244176
Target:  5'- aGCGGGccAGCgCGGCGGCcGUGCuGGCCGCg -3'
miRNA:   3'- -CGUCC--UUG-GUCGCCGuCGCG-UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 118273 0.77 0.249822
Target:  5'- aGCcGGcACCAGCGGCGGUaGCAGCaGCa -3'
miRNA:   3'- -CGuCCuUGGUCGCCGUCG-CGUCGgCG- -5'
14621 3' -60.1 NC_003521.1 + 181457 0.77 0.255574
Target:  5'- cGCGGcguCCAGCGGCuGGCGC-GCCGCc -3'
miRNA:   3'- -CGUCcuuGGUCGCCG-UCGCGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 111506 0.77 0.255574
Target:  5'- aGCGGGcuGgCGGCGGCGGCGCAcGCCa- -3'
miRNA:   3'- -CGUCCu-UgGUCGCCGUCGCGU-CGGcg -5'
14621 3' -60.1 NC_003521.1 + 171603 0.77 0.267404
Target:  5'- aGC-GGAACCcgAGCGGCGGCGgGaguGCCGCc -3'
miRNA:   3'- -CGuCCUUGG--UCGCCGUCGCgU---CGGCG- -5'
14621 3' -60.1 NC_003521.1 + 155405 0.77 0.267404
Target:  5'- gGCGGGGggcugggcACCGGaggccugcugcCGGCcaAGCGCAGCCGCu -3'
miRNA:   3'- -CGUCCU--------UGGUC-----------GCCG--UCGCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 122521 0.77 0.267404
Target:  5'- gGCGGGcaGGCCGGCGGCggugguAGUGCuGCUGCu -3'
miRNA:   3'- -CGUCC--UUGGUCGCCG------UCGCGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 95647 0.77 0.273483
Target:  5'- aGCAGGuGCCAGaCGGaguuGCGCgacuGGCCGCg -3'
miRNA:   3'- -CGUCCuUGGUC-GCCgu--CGCG----UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 123165 0.76 0.285973
Target:  5'- -aAGG-GCCGGCGcaccgucucGCGGCGCAGUCGCa -3'
miRNA:   3'- cgUCCuUGGUCGC---------CGUCGCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 83751 0.76 0.285973
Target:  5'- cGCgGGGGGCCugggacagGGUGGCGGCGCcccccGCCGCg -3'
miRNA:   3'- -CG-UCCUUGG--------UCGCCGUCGCGu----CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.