miRNA display CGI


Results 21 - 40 of 773 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 3' -60.1 NC_003521.1 + 8410 0.74 0.370313
Target:  5'- cGCAGGcGCUGGCGuugccgugccGCAgGCGCAGCCaGCg -3'
miRNA:   3'- -CGUCCuUGGUCGC----------CGU-CGCGUCGG-CG- -5'
14621 3' -60.1 NC_003521.1 + 13441 0.66 0.846169
Target:  5'- -gAGGAcgacggacgucaaGCgCAGCGGCGGUaGC-GCCGUc -3'
miRNA:   3'- cgUCCU-------------UG-GUCGCCGUCG-CGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 13859 0.73 0.43528
Target:  5'- cGCGGGggUCucuGCgGGCGGCGCcGCCa- -3'
miRNA:   3'- -CGUCCuuGGu--CG-CCGUCGCGuCGGcg -5'
14621 3' -60.1 NC_003521.1 + 13915 0.7 0.630409
Target:  5'- -aGGGGGCC-GCGGaggccGCGCuGGCCGCc -3'
miRNA:   3'- cgUCCUUGGuCGCCgu---CGCG-UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 13966 0.68 0.745079
Target:  5'- cGCuGGAGCCcugaugGGCcuGCccGGCGCGGCgGCg -3'
miRNA:   3'- -CGuCCUUGG------UCGc-CG--UCGCGUCGgCG- -5'
14621 3' -60.1 NC_003521.1 + 14442 0.76 0.305544
Target:  5'- uGCAcacGGc-CCuGCGGCGGCGuCAGCCGCc -3'
miRNA:   3'- -CGU---CCuuGGuCGCCGUCGC-GUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 14927 0.69 0.678888
Target:  5'- cGCuucGAGCgCgAGCGGCAGCGcCAGaCGCg -3'
miRNA:   3'- -CGuc-CUUG-G-UCGCCGUCGC-GUCgGCG- -5'
14621 3' -60.1 NC_003521.1 + 15053 0.67 0.789838
Target:  5'- aGC-GGcGCgAGCGcgaGCGGCGCGuGCUGCa -3'
miRNA:   3'- -CGuCCuUGgUCGC---CGUCGCGU-CGGCG- -5'
14621 3' -60.1 NC_003521.1 + 15219 0.72 0.479073
Target:  5'- cGUGGGGcuGCaGGCGGCcgAGCGCgaGGCCGCc -3'
miRNA:   3'- -CGUCCU--UGgUCGCCG--UCGCG--UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 15326 0.74 0.370313
Target:  5'- aGCGGGuGAUCAGCGcGCugguGCaGCAGUCGCg -3'
miRNA:   3'- -CGUCC-UUGGUCGC-CGu---CG-CGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 16200 0.68 0.698088
Target:  5'- uGCuGGccCUucgaGGUGGCGGCGCccuGCCGCc -3'
miRNA:   3'- -CGuCCuuGG----UCGCCGUCGCGu--CGGCG- -5'
14621 3' -60.1 NC_003521.1 + 16256 0.71 0.534294
Target:  5'- ----cAGCCuGCGGCuGCGCuGCCGCu -3'
miRNA:   3'- cguccUUGGuCGCCGuCGCGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 16970 0.76 0.285973
Target:  5'- -gAGGGA-CAGCcGCAGCaGCAGCCGCa -3'
miRNA:   3'- cgUCCUUgGUCGcCGUCG-CGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 17001 0.8 0.171658
Target:  5'- aGCAGGcGCCcgcgguGGCGGCGGCGCAGgcCCGUc -3'
miRNA:   3'- -CGUCCuUGG------UCGCCGUCGCGUC--GGCG- -5'
14621 3' -60.1 NC_003521.1 + 17147 0.68 0.735827
Target:  5'- --uGGuuCCAGCaGCGGCGCgaGGCCGa -3'
miRNA:   3'- cguCCuuGGUCGcCGUCGCG--UCGGCg -5'
14621 3' -60.1 NC_003521.1 + 17470 0.67 0.763305
Target:  5'- cGgAGGAgagacgacggcACCGGUaGCGGCGCcGCCGg -3'
miRNA:   3'- -CgUCCU-----------UGGUCGcCGUCGCGuCGGCg -5'
14621 3' -60.1 NC_003521.1 + 17495 0.73 0.452526
Target:  5'- -gGGGcACCuaucuGCGGCAGCGCGacgagcGCUGCg -3'
miRNA:   3'- cgUCCuUGGu----CGCCGUCGCGU------CGGCG- -5'
14621 3' -60.1 NC_003521.1 + 18253 0.66 0.846929
Target:  5'- --cGGGACgAGCGGUGGUGgGGaccugcCCGCg -3'
miRNA:   3'- cguCCUUGgUCGCCGUCGCgUC------GGCG- -5'
14621 3' -60.1 NC_003521.1 + 18736 0.68 0.698088
Target:  5'- gGCGGcGAucguGgCGGCGGUGGCGCcgacgGGUCGCu -3'
miRNA:   3'- -CGUC-CU----UgGUCGCCGUCGCG-----UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 18787 0.67 0.781112
Target:  5'- cGguGGAggGCCAGCGcuGCuuucGCGUGGCCa- -3'
miRNA:   3'- -CguCCU--UGGUCGC--CGu---CGCGUCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.