miRNA display CGI


Results 21 - 40 of 773 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 3' -60.1 NC_003521.1 + 91641 0.66 0.846929
Target:  5'- cGUGGccGCCGGUGGCGacGCGC-GCCGa -3'
miRNA:   3'- -CGUCcuUGGUCGCCGU--CGCGuCGGCg -5'
14621 3' -60.1 NC_003521.1 + 47429 0.66 0.846929
Target:  5'- cGCucGGGCCAG-GGCAcaUGCAGCCGg -3'
miRNA:   3'- -CGucCUUGGUCgCCGUc-GCGUCGGCg -5'
14621 3' -60.1 NC_003521.1 + 102808 0.66 0.846929
Target:  5'- cCAGcu-CgGGCGGCAGCaaGUAGCgGCg -3'
miRNA:   3'- cGUCcuuGgUCGCCGUCG--CGUCGgCG- -5'
14621 3' -60.1 NC_003521.1 + 151398 0.66 0.846929
Target:  5'- uGCGGGGACgGGUagGGaCGGCGUguguauguGCUGCu -3'
miRNA:   3'- -CGUCCUUGgUCG--CC-GUCGCGu-------CGGCG- -5'
14621 3' -60.1 NC_003521.1 + 38995 0.66 0.846929
Target:  5'- aCAGGcGCUGGUGGauguGGCGCugcacGGCCGUc -3'
miRNA:   3'- cGUCCuUGGUCGCCg---UCGCG-----UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 91509 0.66 0.846929
Target:  5'- gGCGuGAGaccaCGGCGGCcGCGUcGUCGCg -3'
miRNA:   3'- -CGUcCUUg---GUCGCCGuCGCGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 74362 0.66 0.846929
Target:  5'- cGCGGcuacGGCCAGU-GCGGCGaCGGCuCGCc -3'
miRNA:   3'- -CGUCc---UUGGUCGcCGUCGC-GUCG-GCG- -5'
14621 3' -60.1 NC_003521.1 + 111059 0.66 0.846169
Target:  5'- cGCGGGAcagGCgCgguagagGGCGGCgaagacGGCGCGGaCGCg -3'
miRNA:   3'- -CGUCCU---UG-G-------UCGCCG------UCGCGUCgGCG- -5'
14621 3' -60.1 NC_003521.1 + 13441 0.66 0.846169
Target:  5'- -gAGGAcgacggacgucaaGCgCAGCGGCGGUaGC-GCCGUc -3'
miRNA:   3'- cgUCCU-------------UG-GUCGCCGUCG-CGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 40586 0.66 0.846169
Target:  5'- aGCAuGAGCguguugaacauggUAGUGcGcCGGUGCAGCCGCu -3'
miRNA:   3'- -CGUcCUUG-------------GUCGC-C-GUCGCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 117311 0.66 0.846169
Target:  5'- cGC-GGAuuGCgGGCGGCAGCgGCGacgacgacaccccGCCGg -3'
miRNA:   3'- -CGuCCU--UGgUCGCCGUCG-CGU-------------CGGCg -5'
14621 3' -60.1 NC_003521.1 + 186299 0.66 0.846169
Target:  5'- cCGGGccCCAGCGGCGccGUGCAgauccugguccacGCCGg -3'
miRNA:   3'- cGUCCuuGGUCGCCGU--CGCGU-------------CGGCg -5'
14621 3' -60.1 NC_003521.1 + 70801 0.66 0.846169
Target:  5'- --uGGAcGCaCAGCGGCccgaagaGGCGCAGCaagGCc -3'
miRNA:   3'- cguCCU-UG-GUCGCCG-------UCGCGUCGg--CG- -5'
14621 3' -60.1 NC_003521.1 + 68498 0.66 0.844643
Target:  5'- aCAGGAcggccgaggccugcGCCAGCGGCGuCaaGGCUGUg -3'
miRNA:   3'- cGUCCU--------------UGGUCGCCGUcGcgUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 74971 0.66 0.842342
Target:  5'- cGCuGGAGCUuccugugcucgcccgAGCGGguGCGCguagugaucgugGGCCa- -3'
miRNA:   3'- -CGuCCUUGG---------------UCGCCguCGCG------------UCGGcg -5'
14621 3' -60.1 NC_003521.1 + 128959 0.66 0.842342
Target:  5'- -gAGGGGCUGGCGGCguGGCGCuggaaaaagacgauGCUGg -3'
miRNA:   3'- cgUCCUUGGUCGCCG--UCGCGu-------------CGGCg -5'
14621 3' -60.1 NC_003521.1 + 70003 0.66 0.83925
Target:  5'- uGCAGuc-CCAGCG--AGCGCAGCgGUa -3'
miRNA:   3'- -CGUCcuuGGUCGCcgUCGCGUCGgCG- -5'
14621 3' -60.1 NC_003521.1 + 79999 0.66 0.83925
Target:  5'- aGCAaauuGGGCUugGGCGGCuucuGCuGCGGCUGCu -3'
miRNA:   3'- -CGUc---CUUGG--UCGCCGu---CG-CGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 132101 0.66 0.83925
Target:  5'- --uGGAucGCCuaguauuugaGGCGGCgcAGCGCGGCCu- -3'
miRNA:   3'- cguCCU--UGG----------UCGCCG--UCGCGUCGGcg -5'
14621 3' -60.1 NC_003521.1 + 240471 0.66 0.83925
Target:  5'- cGCAGGcGCCGccucCGGCAGCucacGCuugguuGGCCGUu -3'
miRNA:   3'- -CGUCCuUGGUc---GCCGUCG----CG------UCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.