miRNA display CGI


Results 41 - 60 of 773 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 3' -60.1 NC_003521.1 + 90564 0.66 0.83925
Target:  5'- -gAGaGGCCGGCcGCGGUGCAGgCCGa -3'
miRNA:   3'- cgUCcUUGGUCGcCGUCGCGUC-GGCg -5'
14621 3' -60.1 NC_003521.1 + 36710 0.66 0.83925
Target:  5'- gGCccGAGCaGGUGGaGGCGCAGUgGCg -3'
miRNA:   3'- -CGucCUUGgUCGCCgUCGCGUCGgCG- -5'
14621 3' -60.1 NC_003521.1 + 46393 0.66 0.83925
Target:  5'- cGCGGGGugCGuGgGGC-GCGCGGgCCa- -3'
miRNA:   3'- -CGUCCUugGU-CgCCGuCGCGUC-GGcg -5'
14621 3' -60.1 NC_003521.1 + 102028 0.66 0.83925
Target:  5'- aGCAccuGGGCCAcgGCGcGCAGCaCGGCCGg -3'
miRNA:   3'- -CGUc--CUUGGU--CGC-CGUCGcGUCGGCg -5'
14621 3' -60.1 NC_003521.1 + 240471 0.66 0.83925
Target:  5'- cGCAGGcGCCGccucCGGCAGCucacGCuugguuGGCCGUu -3'
miRNA:   3'- -CGUCCuUGGUc---GCCGUCG----CG------UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 110726 0.66 0.83925
Target:  5'- gGCAGGucccggguggaGACCAGCGcGUAcacGUcCAGCCGUc -3'
miRNA:   3'- -CGUCC-----------UUGGUCGC-CGU---CGcGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 118708 0.66 0.83925
Target:  5'- gGCAGGcucAUgGGCGaGgGGCGCGGCaccgGCa -3'
miRNA:   3'- -CGUCCu--UGgUCGC-CgUCGCGUCGg---CG- -5'
14621 3' -60.1 NC_003521.1 + 131215 0.66 0.83925
Target:  5'- -gAGGGGCCGGCGcCAGagacaGC-GUCGCg -3'
miRNA:   3'- cgUCCUUGGUCGCcGUCg----CGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 79999 0.66 0.83925
Target:  5'- aGCAaauuGGGCUugGGCGGCuucuGCuGCGGCUGCu -3'
miRNA:   3'- -CGUc---CUUGG--UCGCCGu---CG-CGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 124048 0.66 0.83925
Target:  5'- cCAGcGuGCCgcGGCGGCGGCcCAcGCUGCa -3'
miRNA:   3'- cGUC-CuUGG--UCGCCGUCGcGU-CGGCG- -5'
14621 3' -60.1 NC_003521.1 + 203712 0.66 0.83925
Target:  5'- cCAGuAGCgA-CGGCAGCaGCAGCCGg -3'
miRNA:   3'- cGUCcUUGgUcGCCGUCG-CGUCGGCg -5'
14621 3' -60.1 NC_003521.1 + 132101 0.66 0.83925
Target:  5'- --uGGAucGCCuaguauuugaGGCGGCgcAGCGCGGCCu- -3'
miRNA:   3'- cguCCU--UGG----------UCGCCG--UCGCGUCGGcg -5'
14621 3' -60.1 NC_003521.1 + 59156 0.66 0.83925
Target:  5'- uGguGG-AUCAGCuGCGGCacgGC-GCCGCg -3'
miRNA:   3'- -CguCCuUGGUCGcCGUCG---CGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 52588 0.66 0.83925
Target:  5'- cGCGGGcAGCUGGUGGCccgaaaGGCcgGCAGUaCGCu -3'
miRNA:   3'- -CGUCC-UUGGUCGCCG------UCG--CGUCG-GCG- -5'
14621 3' -60.1 NC_003521.1 + 197271 0.66 0.83925
Target:  5'- cGC-GGcGCCGGCGGCGGggaGCgggagGGCgGCu -3'
miRNA:   3'- -CGuCCuUGGUCGCCGUCg--CG-----UCGgCG- -5'
14621 3' -60.1 NC_003521.1 + 24222 0.66 0.83925
Target:  5'- aGCAGc-ACCAGCggguugGGCAGCggGCGGUCGg -3'
miRNA:   3'- -CGUCcuUGGUCG------CCGUCG--CGUCGGCg -5'
14621 3' -60.1 NC_003521.1 + 104739 0.66 0.83925
Target:  5'- cGCAcaccGAGCCcuccAGCGuggagaugaGC-GCGCAGCCGCu -3'
miRNA:   3'- -CGUc---CUUGG----UCGC---------CGuCGCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 70003 0.66 0.83925
Target:  5'- uGCAGuc-CCAGCG--AGCGCAGCgGUa -3'
miRNA:   3'- -CGUCcuuGGUCGCcgUCGCGUCGgCG- -5'
14621 3' -60.1 NC_003521.1 + 185160 0.66 0.834561
Target:  5'- cGguGGGGCCcgacgacgaGGUGGCgcaccuguggAGCGUgacgcccucggugugGGCCGCg -3'
miRNA:   3'- -CguCCUUGG---------UCGCCG----------UCGCG---------------UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 218083 0.66 0.834561
Target:  5'- aCAGcGAGgCGGCGGCgccggugacgaugagGGCGUAGagcCCGCu -3'
miRNA:   3'- cGUC-CUUgGUCGCCG---------------UCGCGUC---GGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.