Results 1 - 20 of 773 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14621 | 3' | -60.1 | NC_003521.1 | + | 83751 | 0.76 | 0.285973 |
Target: 5'- cGCgGGGGGCCugggacagGGUGGCGGCGCcccccGCCGCg -3' miRNA: 3'- -CG-UCCUUGG--------UCGCCGUCGCGu----CGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 226367 | 0.79 | 0.207583 |
Target: 5'- cGCGGGAG-CGGCGGCuGaCGCcGCCGCa -3' miRNA: 3'- -CGUCCUUgGUCGCCGuC-GCGuCGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 129996 | 0.79 | 0.212505 |
Target: 5'- cGCugc-GCCGGCGGCGGCGCgcaacGGCCGCu -3' miRNA: 3'- -CGuccuUGGUCGCCGUCGCG-----UCGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 137276 | 0.78 | 0.21601 |
Target: 5'- aGCGGGGGCCccAGCgaccuggagcugcgGGUGGCGCGGCUGCu -3' miRNA: 3'- -CGUCCUUGG--UCG--------------CCGUCGCGUCGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 149747 | 0.78 | 0.217527 |
Target: 5'- gGCAGGucuUCuGCGGCgAGgGCGGCCGCg -3' miRNA: 3'- -CGUCCuu-GGuCGCCG-UCgCGUCGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 136708 | 0.78 | 0.233205 |
Target: 5'- aGCAGGAcgccGCCgaGGaUGGCAGCGC-GCCGCc -3' miRNA: 3'- -CGUCCU----UGG--UC-GCCGUCGCGuCGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 222241 | 0.78 | 0.238638 |
Target: 5'- cGCAGGAACCAGuCGaGC-GCGCucuccAGCUGCg -3' miRNA: 3'- -CGUCCUUGGUC-GC-CGuCGCG-----UCGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 43470 | 0.78 | 0.244176 |
Target: 5'- aGCGGGccAGCgCGGCGGCcGUGCuGGCCGCg -3' miRNA: 3'- -CGUCC--UUG-GUCGCCGuCGCG-UCGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 118273 | 0.77 | 0.249822 |
Target: 5'- aGCcGGcACCAGCGGCGGUaGCAGCaGCa -3' miRNA: 3'- -CGuCCuUGGUCGCCGUCG-CGUCGgCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 31907 | 0.79 | 0.198034 |
Target: 5'- aCAGGAACU-GCGGCAG-GCAGCgCGCg -3' miRNA: 3'- cGUCCUUGGuCGCCGUCgCGUCG-GCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 131095 | 0.79 | 0.188871 |
Target: 5'- cGCGGGcuCCGGacggcggGGCGGCGCGGCUGCc -3' miRNA: 3'- -CGUCCuuGGUCg------CCGUCGCGUCGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 168530 | 0.79 | 0.188871 |
Target: 5'- aGCAGG--CUGGCGGcCAGCGCGGCgGCg -3' miRNA: 3'- -CGUCCuuGGUCGCC-GUCGCGUCGgCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 239363 | 0.84 | 0.092691 |
Target: 5'- aGCGGGAugcccgugugcuGCCAcCGGCGGCGCAGCuCGCg -3' miRNA: 3'- -CGUCCU------------UGGUcGCCGUCGCGUCG-GCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 101978 | 0.83 | 0.118998 |
Target: 5'- -uGGGGuCCAGCaGGCGGUGCAGCUGCg -3' miRNA: 3'- cgUCCUuGGUCG-CCGUCGCGUCGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 60696 | 0.81 | 0.14139 |
Target: 5'- cGCGGGGGacCCGGgGGCGGCGCGgGUCGCa -3' miRNA: 3'- -CGUCCUU--GGUCgCCGUCGCGU-CGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 226891 | 0.81 | 0.155861 |
Target: 5'- uGCGGGGGCaccaCGGCGGcCAGCGCGGCCuccGCg -3' miRNA: 3'- -CGUCCUUG----GUCGCC-GUCGCGUCGG---CG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 73140 | 0.81 | 0.159682 |
Target: 5'- gGCGGGGGCagCGGCGGCGGCGCcgccucGGCCuGCg -3' miRNA: 3'- -CGUCCUUG--GUCGCCGUCGCG------UCGG-CG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 101 | 0.8 | 0.18443 |
Target: 5'- uGCAGGGagGCCgaAGCGGCGGcCGgAGCCGUg -3' miRNA: 3'- -CGUCCU--UGG--UCGCCGUC-GCgUCGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 150664 | 0.8 | 0.18443 |
Target: 5'- gGCGGcucuCCGGCGGCGGCGCcGCUGCu -3' miRNA: 3'- -CGUCcuu-GGUCGCCGUCGCGuCGGCG- -5' |
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14621 | 3' | -60.1 | NC_003521.1 | + | 240650 | 0.8 | 0.18443 |
Target: 5'- uGCAGGGagGCCgaAGCGGCGGcCGgAGCCGUg -3' miRNA: 3'- -CGUCCU--UGG--UCGCCGUC-GCgUCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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