miRNA display CGI


Results 1 - 20 of 773 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 3' -60.1 NC_003521.1 + 103646 0.86 0.075716
Target:  5'- aGCGGGGGCagcuCGGCGGCGGCcgcuGCGGCCGCg -3'
miRNA:   3'- -CGUCCUUG----GUCGCCGUCG----CGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 95647 0.77 0.273483
Target:  5'- aGCAGGuGCCAGaCGGaguuGCGCgacuGGCCGCg -3'
miRNA:   3'- -CGUCCuUGGUC-GCCgu--CGCG----UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 172465 0.76 0.285973
Target:  5'- gGCAGG-GCCGGCaGCGGUGC-GCCGUc -3'
miRNA:   3'- -CGUCCuUGGUCGcCGUCGCGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 92243 0.66 0.846929
Target:  5'- aCGGGcGCCGcGCGGUcuuuuGGC-CGGUCGCg -3'
miRNA:   3'- cGUCCuUGGU-CGCCG-----UCGcGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 123577 0.81 0.159682
Target:  5'- gGCGGGAu--GGCGGCGGCGCcgggAGCCGCc -3'
miRNA:   3'- -CGUCCUuggUCGCCGUCGCG----UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 17001 0.8 0.171658
Target:  5'- aGCAGGcGCCcgcgguGGCGGCGGCGCAGgcCCGUc -3'
miRNA:   3'- -CGUCCuUGG------UCGCCGUCGCGUC--GGCG- -5'
14621 3' -60.1 NC_003521.1 + 84416 0.79 0.188871
Target:  5'- uGUAGGuGACCAGCGGCAGgGUGGCgaaGCg -3'
miRNA:   3'- -CGUCC-UUGGUCGCCGUCgCGUCGg--CG- -5'
14621 3' -60.1 NC_003521.1 + 195190 0.78 0.217527
Target:  5'- cGC-GGAGCCGGCGGCGGU--GGCCGUc -3'
miRNA:   3'- -CGuCCUUGGUCGCCGUCGcgUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 110687 0.78 0.244176
Target:  5'- cGguGGcGgCAGCGGCGGCGCcGCCGa -3'
miRNA:   3'- -CguCCuUgGUCGCCGUCGCGuCGGCg -5'
14621 3' -60.1 NC_003521.1 + 155405 0.77 0.267404
Target:  5'- gGCGGGGggcugggcACCGGaggccugcugcCGGCcaAGCGCAGCCGCu -3'
miRNA:   3'- -CGUCCU--------UGGUC-----------GCCG--UCGCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 181457 0.77 0.255574
Target:  5'- cGCGGcguCCAGCGGCuGGCGC-GCCGCc -3'
miRNA:   3'- -CGUCcuuGGUCGCCG-UCGCGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 103113 0.78 0.244176
Target:  5'- gGCAGGcgaagagcuGGCgCAGCGcGCGGCGguGCUGCa -3'
miRNA:   3'- -CGUCC---------UUG-GUCGC-CGUCGCguCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 39135 0.84 0.092691
Target:  5'- aGCGGGAugcccgugugcuGCCAcCGGCGGCGCAGCuCGCg -3'
miRNA:   3'- -CGUCCU------------UGGUcGCCGUCGCGUCG-GCG- -5'
14621 3' -60.1 NC_003521.1 + 122521 0.77 0.267404
Target:  5'- gGCGGGcaGGCCGGCGGCggugguAGUGCuGCUGCu -3'
miRNA:   3'- -CGUCC--UUGGUCGCCG------UCGCGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 120237 0.83 0.116082
Target:  5'- gGCAGGAGCCGGCGGCcGCGCcguGCauCGCc -3'
miRNA:   3'- -CGUCCUUGGUCGCCGuCGCGu--CG--GCG- -5'
14621 3' -60.1 NC_003521.1 + 99950 0.78 0.238638
Target:  5'- cGCAGGGG--GGCGGCGGCGCcucGGCCGa -3'
miRNA:   3'- -CGUCCUUggUCGCCGUCGCG---UCGGCg -5'
14621 3' -60.1 NC_003521.1 + 171603 0.77 0.267404
Target:  5'- aGC-GGAACCcgAGCGGCGGCGgGaguGCCGCc -3'
miRNA:   3'- -CGuCCUUGG--UCGCCGUCGCgU---CGGCG- -5'
14621 3' -60.1 NC_003521.1 + 16970 0.76 0.285973
Target:  5'- -gAGGGA-CAGCcGCAGCaGCAGCCGCa -3'
miRNA:   3'- cgUCCUUgGUCGcCGUCG-CGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 98465 0.81 0.148465
Target:  5'- -gAGGAGgCGGCGGCGGCcgcgGCGGCCGUg -3'
miRNA:   3'- cgUCCUUgGUCGCCGUCG----CGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 40423 0.8 0.18443
Target:  5'- uGCAGGGagGCCgaAGCGGCGGcCGgAGCCGUg -3'
miRNA:   3'- -CGUCCU--UGG--UCGCCGUC-GCgUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.