miRNA display CGI


Results 41 - 60 of 773 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 3' -60.1 NC_003521.1 + 18900 0.68 0.726495
Target:  5'- -gAGGcGCC-GCGGCAGCcccgaagggugGC-GCCGCg -3'
miRNA:   3'- cgUCCuUGGuCGCCGUCG-----------CGuCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 19045 0.75 0.340408
Target:  5'- cGCuGGAGCUucgaGGaCGGCGGCGCGG-CGCa -3'
miRNA:   3'- -CGuCCUUGG----UC-GCCGUCGCGUCgGCG- -5'
14621 3' -60.1 NC_003521.1 + 19462 0.68 0.717089
Target:  5'- gGCGGG-ACCAuGUcGCuGCGCGGCCa- -3'
miRNA:   3'- -CGUCCuUGGU-CGcCGuCGCGUCGGcg -5'
14621 3' -60.1 NC_003521.1 + 24222 0.66 0.83925
Target:  5'- aGCAGc-ACCAGCggguugGGCAGCggGCGGUCGg -3'
miRNA:   3'- -CGUCcuUGGUCG------CCGUCG--CGUCGGCg -5'
14621 3' -60.1 NC_003521.1 + 24435 0.72 0.484475
Target:  5'- cGCAGGGGCCGGCGGgCucggaacagguccGCGCGGaCCa- -3'
miRNA:   3'- -CGUCCUUGGUCGCC-Gu------------CGCGUC-GGcg -5'
14621 3' -60.1 NC_003521.1 + 25541 0.66 0.806899
Target:  5'- -aGGGAGagcgaCGGCGgacgcuguuguGCAG-GCGGCCGCg -3'
miRNA:   3'- cgUCCUUg----GUCGC-----------CGUCgCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 25772 0.69 0.659549
Target:  5'- cCAGGcAGcCCAGgGGCuccaCGCGGCUGCa -3'
miRNA:   3'- cGUCC-UU-GGUCgCCGuc--GCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 26164 0.7 0.620688
Target:  5'- gGUAGGua-CAGauGCugccaacgaAGCGCAGCCGCu -3'
miRNA:   3'- -CGUCCuugGUCgcCG---------UCGCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 27513 0.67 0.763305
Target:  5'- -gGGGGGCguGCGGCccgaGGCGCccacGGUgGCg -3'
miRNA:   3'- cgUCCUUGguCGCCG----UCGCG----UCGgCG- -5'
14621 3' -60.1 NC_003521.1 + 27972 0.72 0.506363
Target:  5'- cCAGGcggcgcucacGGCCacGGCGGCAGCGUgAGCgGCa -3'
miRNA:   3'- cGUCC----------UUGG--UCGCCGUCGCG-UCGgCG- -5'
14621 3' -60.1 NC_003521.1 + 28265 0.72 0.496276
Target:  5'- -gAGGAA-CAGCGGCGGCgaugacaGCAGCCa- -3'
miRNA:   3'- cgUCCUUgGUCGCCGUCG-------CGUCGGcg -5'
14621 3' -60.1 NC_003521.1 + 28303 0.66 0.823388
Target:  5'- aCGaGAG-CAGCGGCagcgaccccGGCGCGGCCuGCg -3'
miRNA:   3'- cGUcCUUgGUCGCCG---------UCGCGUCGG-CG- -5'
14621 3' -60.1 NC_003521.1 + 28837 0.7 0.591601
Target:  5'- uGCGGcgccuggacgacGAGCU-GCGGCGGCGCGGCaCGg -3'
miRNA:   3'- -CGUC------------CUUGGuCGCCGUCGCGUCG-GCg -5'
14621 3' -60.1 NC_003521.1 + 29234 0.68 0.706667
Target:  5'- uGCAGGAcgucuccggggacACCgccgcgAGCGuGCGGCGCuacuGGCUGUa -3'
miRNA:   3'- -CGUCCU-------------UGG------UCGC-CGUCGCG----UCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 29243 0.69 0.649846
Target:  5'- -uGGGccuCCAGCcGCGGCGacgacCAGCCGCu -3'
miRNA:   3'- cgUCCuu-GGUCGcCGUCGC-----GUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 29528 0.68 0.707617
Target:  5'- -gGGGAACguGCGuGCAGaCuuGGCCGUa -3'
miRNA:   3'- cgUCCUUGguCGC-CGUC-GcgUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 30244 0.72 0.488092
Target:  5'- uGCAGGu-CCGcGCGGUugccguGGCGCAGCUGa -3'
miRNA:   3'- -CGUCCuuGGU-CGCCG------UCGCGUCGGCg -5'
14621 3' -60.1 NC_003521.1 + 30785 0.67 0.781112
Target:  5'- cGCuGGAugUgggcGCGGUAGCGCAccgagggcccGCCGg -3'
miRNA:   3'- -CGuCCUugGu---CGCCGUCGCGU----------CGGCg -5'
14621 3' -60.1 NC_003521.1 + 30914 0.69 0.649846
Target:  5'- gGCAGGcGagAGCGGUccuGGgGCAGUCGCc -3'
miRNA:   3'- -CGUCCuUggUCGCCG---UCgCGUCGGCG- -5'
14621 3' -60.1 NC_003521.1 + 30965 0.71 0.543728
Target:  5'- cCAGGcGCuCGGCacGCAGCaGCAGCUGCg -3'
miRNA:   3'- cGUCCuUG-GUCGc-CGUCG-CGUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.