miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 216357 0.66 0.969882
Target:  5'- -aGCA---CGCGCU-GGCCAGGCaGaGCa -3'
miRNA:   3'- caUGUaaaGCGUGAgCCGGUCCG-C-CG- -5'
14621 5' -54.9 NC_003521.1 + 166764 0.66 0.969882
Target:  5'- -gACAgcggCGCgugaGCUCGGgaCAGGCGGg -3'
miRNA:   3'- caUGUaaa-GCG----UGAGCCg-GUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 70307 0.66 0.969882
Target:  5'- gGUGCAggUCGCccagCaGCgAGGCGGUg -3'
miRNA:   3'- -CAUGUaaAGCGuga-GcCGgUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 112420 0.66 0.96721
Target:  5'- -cGCcUUUCGgACcgacgcccgcucaggCGGcCCAGGCGGCc -3'
miRNA:   3'- caUGuAAAGCgUGa--------------GCC-GGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 87870 0.66 0.966903
Target:  5'- -cGCAg---GCGCU-GGCCAGGCcguuGGCg -3'
miRNA:   3'- caUGUaaagCGUGAgCCGGUCCG----CCG- -5'
14621 5' -54.9 NC_003521.1 + 50305 0.66 0.966903
Target:  5'- -cGCAccUCGCucCUCaGCCAGGgaGGCa -3'
miRNA:   3'- caUGUaaAGCGu-GAGcCGGUCCg-CCG- -5'
14621 5' -54.9 NC_003521.1 + 156669 0.66 0.966903
Target:  5'- -aACGUcUCGCGCUUcGUCAGuCGGCu -3'
miRNA:   3'- caUGUAaAGCGUGAGcCGGUCcGCCG- -5'
14621 5' -54.9 NC_003521.1 + 199663 0.66 0.969882
Target:  5'- -aGCAgagUCGCGua-GGCCAGuagucGCGGCg -3'
miRNA:   3'- caUGUaa-AGCGUgagCCGGUC-----CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 187870 0.67 0.948874
Target:  5'- uUGCAUggCGguCaccaccucgggCGGCaCGGGCGGCg -3'
miRNA:   3'- cAUGUAaaGCguGa----------GCCG-GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 43483 0.67 0.952912
Target:  5'- -gGCGgc-CGUGCU-GGCCGcGGCGGCc -3'
miRNA:   3'- caUGUaaaGCGUGAgCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 148424 0.67 0.952912
Target:  5'- gGUGCGggcggcCGCGCcggCGGCUccagGGGUGGCc -3'
miRNA:   3'- -CAUGUaaa---GCGUGa--GCCGG----UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 226269 0.67 0.952912
Target:  5'- -cGCAgUUCaggauGCGCUCGGCCGuGGCGu- -3'
miRNA:   3'- caUGUaAAG-----CGUGAGCCGGU-CCGCcg -5'
14621 5' -54.9 NC_003521.1 + 27268 0.67 0.956731
Target:  5'- aUGCGg--CcCACgaaGGCCAGGCGGg -3'
miRNA:   3'- cAUGUaaaGcGUGag-CCGGUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 105644 0.67 0.948874
Target:  5'- uGUGCGUgaaGCccaGCUCGGgggUGGGCGGCa -3'
miRNA:   3'- -CAUGUAaagCG---UGAGCCg--GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 236026 0.67 0.944611
Target:  5'- -aACAUgaUGCACUucgUGGUCAGGCaGCu -3'
miRNA:   3'- caUGUAaaGCGUGA---GCCGGUCCGcCG- -5'
14621 5' -54.9 NC_003521.1 + 77713 0.67 0.944611
Target:  5'- -gGCGg--CGUugUUGGCgAcGGCGGCc -3'
miRNA:   3'- caUGUaaaGCGugAGCCGgU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 160769 0.67 0.963721
Target:  5'- ----cUUUCGCGCgugCcGCC-GGCGGCa -3'
miRNA:   3'- cauguAAAGCGUGa--GcCGGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 178241 0.67 0.956731
Target:  5'- -gGCuc-UCGCACU-GG-UAGGCGGCg -3'
miRNA:   3'- caUGuaaAGCGUGAgCCgGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 42198 0.67 0.963721
Target:  5'- -gGCGUUUC-C-CUgGGCCA-GCGGCu -3'
miRNA:   3'- caUGUAAAGcGuGAgCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 83480 0.67 0.963721
Target:  5'- -aGCAUUUCGCGgUCcuGCCcguaGCGGCu -3'
miRNA:   3'- caUGUAAAGCGUgAGc-CGGuc--CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.