Results 21 - 40 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14621 | 5' | -54.9 | NC_003521.1 | + | 98209 | 0.66 | 0.969882 |
Target: 5'- ------gUUGCugUCGGCgGGcaGCGGCg -3' miRNA: 3'- cauguaaAGCGugAGCCGgUC--CGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 100237 | 0.66 | 0.969882 |
Target: 5'- -aGCGUcUCGC---CGGCCgcgaaauccucGGGCGGCg -3' miRNA: 3'- caUGUAaAGCGugaGCCGG-----------UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 214198 | 0.66 | 0.971018 |
Target: 5'- -aACGUgcCGCACguccugaaagaggaCGGCCAGGauGCa -3' miRNA: 3'- caUGUAaaGCGUGa-------------GCCGGUCCgcCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 199663 | 0.66 | 0.969882 |
Target: 5'- -aGCAgagUCGCGua-GGCCAGuagucGCGGCg -3' miRNA: 3'- caUGUaa-AGCGUgagCCGGUC-----CGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 222687 | 0.66 | 0.972665 |
Target: 5'- -aGCGgcUCGaccuCggugCGGCCGGGCGuGCg -3' miRNA: 3'- caUGUaaAGCgu--Ga---GCCGGUCCGC-CG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 85900 | 0.66 | 0.975256 |
Target: 5'- -gACAUgaccCGacuCUUGGUCAGGuCGGCg -3' miRNA: 3'- caUGUAaa--GCgu-GAGCCGGUCC-GCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 139793 | 0.66 | 0.975256 |
Target: 5'- -gGCG--UCGCcCUCGGC--GGUGGCg -3' miRNA: 3'- caUGUaaAGCGuGAGCCGguCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 152594 | 0.66 | 0.971018 |
Target: 5'- aGUACAcgaUgGCcucCUCGGCgcccugguuggucacCAGGCGGCg -3' miRNA: 3'- -CAUGUaa-AgCGu--GAGCCG---------------GUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 216357 | 0.66 | 0.969882 |
Target: 5'- -aGCA---CGCGCU-GGCCAGGCaGaGCa -3' miRNA: 3'- caUGUaaaGCGUGAgCCGGUCCG-C-CG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 85738 | 0.66 | 0.975006 |
Target: 5'- cUGCAg--CGCcgcgaACUUGGCCaugagcgAGGUGGCc -3' miRNA: 3'- cAUGUaaaGCG-----UGAGCCGG-------UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 116604 | 0.66 | 0.969882 |
Target: 5'- cUGCAagUCGCug-CGGCCcgacaAGGUGGUg -3' miRNA: 3'- cAUGUaaAGCGugaGCCGG-----UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 72237 | 0.66 | 0.975256 |
Target: 5'- cGUGCA---CGUACUUGaGgaAGGCGGCg -3' miRNA: 3'- -CAUGUaaaGCGUGAGC-CggUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 127129 | 0.66 | 0.972664 |
Target: 5'- -cGCGUcgUGCACcu--CCAGGCGGCg -3' miRNA: 3'- caUGUAaaGCGUGagccGGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 15514 | 0.66 | 0.969882 |
Target: 5'- --------gGCGCUCGGgUuGGCGGCg -3' miRNA: 3'- cauguaaagCGUGAGCCgGuCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 32103 | 0.66 | 0.975256 |
Target: 5'- aUGCGUUUgGCGgcgcggcugauCUCGGgCAGGUagcgGGCg -3' miRNA: 3'- cAUGUAAAgCGU-----------GAGCCgGUCCG----CCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 36583 | 0.66 | 0.966903 |
Target: 5'- -------aUGCGCgaacUGGCCuGGCGGCg -3' miRNA: 3'- cauguaaaGCGUGa---GCCGGuCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 111589 | 0.66 | 0.966903 |
Target: 5'- gGUGC----CGCGCgUGGCCA-GCGGCg -3' miRNA: 3'- -CAUGuaaaGCGUGaGCCGGUcCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 124033 | 0.66 | 0.972664 |
Target: 5'- -cGCGgc-CGUAgaCGGCCAgcgugccgcGGCGGCg -3' miRNA: 3'- caUGUaaaGCGUgaGCCGGU---------CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 181727 | 0.66 | 0.975256 |
Target: 5'- -gACGcg-CGCACgcuGGCCAaGCGGCc -3' miRNA: 3'- caUGUaaaGCGUGag-CCGGUcCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 39400 | 0.66 | 0.977664 |
Target: 5'- gGUACAgcugguccugUUgGCACa-GGCCguccagucccguAGGCGGCg -3' miRNA: 3'- -CAUGUa---------AAgCGUGagCCGG------------UCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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