miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 120847 0.73 0.710996
Target:  5'- gGUGcCAUgcUGgACUCGGCCuugAGGCGGCc -3'
miRNA:   3'- -CAU-GUAaaGCgUGAGCCGG---UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 103217 0.73 0.720755
Target:  5'- cUGgAUgaggUCGC---CGGCCAGGCGGCg -3'
miRNA:   3'- cAUgUAa---AGCGugaGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 24160 0.73 0.720755
Target:  5'- gGUACucgcgggGCACUCGgaaaggagcgaaGCCGGGCGGCa -3'
miRNA:   3'- -CAUGuaaag--CGUGAGC------------CGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 74356 0.73 0.730441
Target:  5'- cUGCug--CGCgGCUaCGGCCAGuGCGGCg -3'
miRNA:   3'- cAUGuaaaGCG-UGA-GCCGGUC-CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 106601 0.73 0.740046
Target:  5'- -cGCGggcaGCuACUCGGCCAaGCGGCa -3'
miRNA:   3'- caUGUaaagCG-UGAGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 60675 0.73 0.743863
Target:  5'- aUGCucUUCGUGCUgCGGCCgcgcgggggacccggGGGCGGCg -3'
miRNA:   3'- cAUGuaAAGCGUGA-GCCGG---------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 106453 0.72 0.767355
Target:  5'- -cGCAguagCGCAuguugagcgacuuCUCGGCCAgcaucGGCGGCg -3'
miRNA:   3'- caUGUaaa-GCGU-------------GAGCCGGU-----CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 175790 0.72 0.77747
Target:  5'- -gGCAUaccccacaGC-CUCGGCCcuGGGCGGCa -3'
miRNA:   3'- caUGUAaag-----CGuGAGCCGG--UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 201387 0.72 0.77747
Target:  5'- -gGCGc--CGgGCUCGGCCGGcaGCGGCa -3'
miRNA:   3'- caUGUaaaGCgUGAGCCGGUC--CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 167263 0.72 0.77747
Target:  5'- -aGCGcc-CGCACcaCGGCCAGGUGGUu -3'
miRNA:   3'- caUGUaaaGCGUGa-GCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 101903 0.72 0.786535
Target:  5'- uGUACAUguagggcaggCGCACcgagCGGCCGuGGUGGUa -3'
miRNA:   3'- -CAUGUAaa--------GCGUGa---GCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 123678 0.72 0.786535
Target:  5'- -aGCcgg-CGCGCUgCGGCguGGCGGUg -3'
miRNA:   3'- caUGuaaaGCGUGA-GCCGguCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 103836 0.71 0.795466
Target:  5'- uGUACAggggcCGCGuCUCGGCCucguccAGGCuGGCg -3'
miRNA:   3'- -CAUGUaaa--GCGU-GAGCCGG------UCCG-CCG- -5'
14621 5' -54.9 NC_003521.1 + 76951 0.71 0.801633
Target:  5'- gGUGCGUUccaGCAUgucgCGGCCGaugcgcgugaugcuGGCGGCg -3'
miRNA:   3'- -CAUGUAAag-CGUGa---GCCGGU--------------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 184020 0.71 0.804254
Target:  5'- -gACucgUUCGCGCgcgacgcCGGUUGGGCGGCc -3'
miRNA:   3'- caUGua-AAGCGUGa------GCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 177184 0.71 0.812036
Target:  5'- -cACGgggUUGCGCgugCGGuacuucuCCAGGCGGCg -3'
miRNA:   3'- caUGUaa-AGCGUGa--GCC-------GGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 117212 0.71 0.812893
Target:  5'- gGUGgAgaugUCGCACccgcugaCGGCCGcGGCGGCu -3'
miRNA:   3'- -CAUgUaa--AGCGUGa------GCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 127541 0.71 0.821374
Target:  5'- uGUGCGgcggcaGCACgccgUCGGCCAGGUgcucGGCg -3'
miRNA:   3'- -CAUGUaaag--CGUG----AGCCGGUCCG----CCG- -5'
14621 5' -54.9 NC_003521.1 + 110676 0.71 0.821374
Target:  5'- -gGCGUa--GCGCUCGGU--GGCGGCa -3'
miRNA:   3'- caUGUAaagCGUGAGCCGguCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 126128 0.71 0.828865
Target:  5'- cUGCAga-CGCGacccacgUagGGCCAGGCGGCg -3'
miRNA:   3'- cAUGUaaaGCGU-------GagCCGGUCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.