miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 85738 0.66 0.975006
Target:  5'- cUGCAg--CGCcgcgaACUUGGCCaugagcgAGGUGGCc -3'
miRNA:   3'- cAUGUaaaGCG-----UGAGCCGG-------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 156686 0.66 0.974498
Target:  5'- -gACAUcUUCGCGCUCggggaaaaggugcuGGCCGGGgaGGa -3'
miRNA:   3'- caUGUA-AAGCGUGAG--------------CCGGUCCg-CCg -5'
14621 5' -54.9 NC_003521.1 + 222687 0.66 0.972665
Target:  5'- -aGCGgcUCGaccuCggugCGGCCGGGCGuGCg -3'
miRNA:   3'- caUGUaaAGCgu--Ga---GCCGGUCCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 127129 0.66 0.972664
Target:  5'- -cGCGUcgUGCACcu--CCAGGCGGCg -3'
miRNA:   3'- caUGUAaaGCGUGagccGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 205334 0.66 0.972664
Target:  5'- cUACGg--CGCcucCUCGGC--GGCGGCa -3'
miRNA:   3'- cAUGUaaaGCGu--GAGCCGguCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 124033 0.66 0.972664
Target:  5'- -cGCGgc-CGUAgaCGGCCAgcgugccgcGGCGGCg -3'
miRNA:   3'- caUGUaaaGCGUgaGCCGGU---------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 214198 0.66 0.971018
Target:  5'- -aACGUgcCGCACguccugaaagaggaCGGCCAGGauGCa -3'
miRNA:   3'- caUGUAaaGCGUGa-------------GCCGGUCCgcCG- -5'
14621 5' -54.9 NC_003521.1 + 57612 0.66 0.971018
Target:  5'- -aGCGUgccgUCGCGCUCcaggcacgucacgggGGCCgaaacgggacGGGaCGGCg -3'
miRNA:   3'- caUGUAa---AGCGUGAG---------------CCGG----------UCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 152594 0.66 0.971018
Target:  5'- aGUACAcgaUgGCcucCUCGGCgcccugguuggucacCAGGCGGCg -3'
miRNA:   3'- -CAUGUaa-AgCGu--GAGCCG---------------GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 70307 0.66 0.969882
Target:  5'- gGUGCAggUCGCccagCaGCgAGGCGGUg -3'
miRNA:   3'- -CAUGUaaAGCGuga-GcCGgUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 199663 0.66 0.969882
Target:  5'- -aGCAgagUCGCGua-GGCCAGuagucGCGGCg -3'
miRNA:   3'- caUGUaa-AGCGUgagCCGGUC-----CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 166764 0.66 0.969882
Target:  5'- -gACAgcggCGCgugaGCUCGGgaCAGGCGGg -3'
miRNA:   3'- caUGUaaa-GCG----UGAGCCg-GUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 197441 0.66 0.969882
Target:  5'- --------gGC-CaUGGCCAGGCGGCg -3'
miRNA:   3'- cauguaaagCGuGaGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 102968 0.66 0.969882
Target:  5'- -gGCGUcg-GgGCUCuGGCgGGGCGGCc -3'
miRNA:   3'- caUGUAaagCgUGAG-CCGgUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 15514 0.66 0.969882
Target:  5'- --------gGCGCUCGGgUuGGCGGCg -3'
miRNA:   3'- cauguaaagCGUGAGCCgGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 100237 0.66 0.969882
Target:  5'- -aGCGUcUCGC---CGGCCgcgaaauccucGGGCGGCg -3'
miRNA:   3'- caUGUAaAGCGugaGCCGG-----------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 98209 0.66 0.969882
Target:  5'- ------gUUGCugUCGGCgGGcaGCGGCg -3'
miRNA:   3'- cauguaaAGCGugAGCCGgUC--CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 216357 0.66 0.969882
Target:  5'- -aGCA---CGCGCU-GGCCAGGCaGaGCa -3'
miRNA:   3'- caUGUaaaGCGUGAgCCGGUCCG-C-CG- -5'
14621 5' -54.9 NC_003521.1 + 116604 0.66 0.969882
Target:  5'- cUGCAagUCGCug-CGGCCcgacaAGGUGGUg -3'
miRNA:   3'- cAUGUaaAGCGugaGCCGG-----UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 112420 0.66 0.96721
Target:  5'- -cGCcUUUCGgACcgacgcccgcucaggCGGcCCAGGCGGCc -3'
miRNA:   3'- caUGuAAAGCgUGa--------------GCC-GGUCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.