miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 36583 0.66 0.966903
Target:  5'- -------aUGCGCgaacUGGCCuGGCGGCg -3'
miRNA:   3'- cauguaaaGCGUGa---GCCGGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 111589 0.66 0.966903
Target:  5'- gGUGC----CGCGCgUGGCCA-GCGGCg -3'
miRNA:   3'- -CAUGuaaaGCGUGaGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 141183 0.66 0.966903
Target:  5'- uGUGCuccuUUUCGCGggUGGCCGuGGCGcuGCg -3'
miRNA:   3'- -CAUGu---AAAGCGUgaGCCGGU-CCGC--CG- -5'
14621 5' -54.9 NC_003521.1 + 126487 0.66 0.966903
Target:  5'- -cACGUcUUCGaCGaagaGcGCCAGGCGGCa -3'
miRNA:   3'- caUGUA-AAGC-GUgag-C-CGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 156669 0.66 0.966903
Target:  5'- -aACGUcUCGCGCUUcGUCAGuCGGCu -3'
miRNA:   3'- caUGUAaAGCGUGAGcCGGUCcGCCG- -5'
14621 5' -54.9 NC_003521.1 + 87870 0.66 0.966903
Target:  5'- -cGCAg---GCGCU-GGCCAGGCcguuGGCg -3'
miRNA:   3'- caUGUaaagCGUGAgCCGGUCCG----CCG- -5'
14621 5' -54.9 NC_003521.1 + 50305 0.66 0.966903
Target:  5'- -cGCAccUCGCucCUCaGCCAGGgaGGCa -3'
miRNA:   3'- caUGUaaAGCGu-GAGcCGGUCCg-CCG- -5'
14621 5' -54.9 NC_003521.1 + 90063 0.66 0.966903
Target:  5'- -cGCGag-CGCACacgCGGgCGGGCGcGCa -3'
miRNA:   3'- caUGUaaaGCGUGa--GCCgGUCCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 88530 0.67 0.963721
Target:  5'- cGUGCAgg-CGCACcgaaaCGGCCuccucgGGGCagGGCa -3'
miRNA:   3'- -CAUGUaaaGCGUGa----GCCGG------UCCG--CCG- -5'
14621 5' -54.9 NC_003521.1 + 86316 0.67 0.963721
Target:  5'- -gGCGUgaUUCugGCACgUCaGCCGGGUGGUg -3'
miRNA:   3'- caUGUA--AAG--CGUG-AGcCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 42198 0.67 0.963721
Target:  5'- -gGCGUUUC-C-CUgGGCCA-GCGGCu -3'
miRNA:   3'- caUGUAAAGcGuGAgCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 128452 0.67 0.963721
Target:  5'- --------aGCGCUCGcCCAGGCGGa -3'
miRNA:   3'- cauguaaagCGUGAGCcGGUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 24235 0.67 0.963721
Target:  5'- gGUugGgca-GCGggCGGUCGGGCGGUa -3'
miRNA:   3'- -CAugUaaagCGUgaGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 101598 0.67 0.963721
Target:  5'- cGUACAggUgGUagcucaggACgUCGGCCAGGgccCGGCg -3'
miRNA:   3'- -CAUGUaaAgCG--------UG-AGCCGGUCC---GCCG- -5'
14621 5' -54.9 NC_003521.1 + 168530 0.67 0.963721
Target:  5'- -aGCAg---GCuggCGGCCAGcGCGGCg -3'
miRNA:   3'- caUGUaaagCGugaGCCGGUC-CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 208930 0.67 0.963721
Target:  5'- -cGCAgUUCcuGUGCcgCGGCCuGGCGGUg -3'
miRNA:   3'- caUGUaAAG--CGUGa-GCCGGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 83480 0.67 0.963721
Target:  5'- -aGCAUUUCGCGgUCcuGCCcguaGCGGCu -3'
miRNA:   3'- caUGUAAAGCGUgAGc-CGGuc--CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 160769 0.67 0.963721
Target:  5'- ----cUUUCGCGCgugCcGCC-GGCGGCa -3'
miRNA:   3'- cauguAAAGCGUGa--GcCGGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 85395 0.67 0.963721
Target:  5'- -aGCGgc-UGCGCUUGGCC-GGCaGCa -3'
miRNA:   3'- caUGUaaaGCGUGAGCCGGuCCGcCG- -5'
14621 5' -54.9 NC_003521.1 + 150935 0.67 0.960332
Target:  5'- gGUGCGgguUUUCaCACaCcGCCAGGUGGCg -3'
miRNA:   3'- -CAUGU---AAAGcGUGaGcCGGUCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.