miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 175429 0.66 0.977664
Target:  5'- -cGCGUcugaguggCGUGCUCGGCguacgaucGGCGGCg -3'
miRNA:   3'- caUGUAaa------GCGUGAGCCGgu------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 139193 0.66 0.977664
Target:  5'- -aACGUgaCGCGCUaccaGcGCCGGGCccuGGCc -3'
miRNA:   3'- caUGUAaaGCGUGAg---C-CGGUCCG---CCG- -5'
14621 5' -54.9 NC_003521.1 + 239627 0.66 0.977664
Target:  5'- gGUACAgcugguccugUUgGCACa-GGCCguccagucccguAGGCGGCg -3'
miRNA:   3'- -CAUGUa---------AAgCGUGagCCGG------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 49257 0.66 0.977664
Target:  5'- -------cUGCGCUCGGCCucuAGGaUGGCc -3'
miRNA:   3'- cauguaaaGCGUGAGCCGG---UCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 145568 0.66 0.977664
Target:  5'- cGUGCAgaaCGUGCUgCGGCgGcacgacgcGGCGGCc -3'
miRNA:   3'- -CAUGUaaaGCGUGA-GCCGgU--------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 117511 0.66 0.977664
Target:  5'- cGUACGgcgguaUGCACUCcgugGGCUAcgacgaccuGGCGGCa -3'
miRNA:   3'- -CAUGUaaa---GCGUGAG----CCGGU---------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 54526 0.66 0.977664
Target:  5'- cUGCAcggCGcCGCUgGgGCCcGGCGGCu -3'
miRNA:   3'- cAUGUaaaGC-GUGAgC-CGGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 229375 0.66 0.977664
Target:  5'- uGUACAcgUCGUucgUGGCCcaaagacacGGGUGGCg -3'
miRNA:   3'- -CAUGUaaAGCGugaGCCGG---------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 39400 0.66 0.977664
Target:  5'- gGUACAgcugguccugUUgGCACa-GGCCguccagucccguAGGCGGCg -3'
miRNA:   3'- -CAUGUa---------AAgCGUGagCCGG------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 212536 0.66 0.977664
Target:  5'- cUGCuc-UCGUugUCGGUguGGCuGCu -3'
miRNA:   3'- cAUGuaaAGCGugAGCCGguCCGcCG- -5'
14621 5' -54.9 NC_003521.1 + 98523 0.66 0.977431
Target:  5'- -gACGcg-CGCgGCUgGGCCGcugcagcGGCGGCg -3'
miRNA:   3'- caUGUaaaGCG-UGAgCCGGU-------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 117027 0.66 0.977431
Target:  5'- -cGCGagUCGUACgucaaGGCCaguguuucgcccgAGGCGGCc -3'
miRNA:   3'- caUGUaaAGCGUGag---CCGG-------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 192969 0.66 0.975256
Target:  5'- -aGCA---UGUuCUCGGCCAcGGCGGg -3'
miRNA:   3'- caUGUaaaGCGuGAGCCGGU-CCGCCg -5'
14621 5' -54.9 NC_003521.1 + 85900 0.66 0.975256
Target:  5'- -gACAUgaccCGacuCUUGGUCAGGuCGGCg -3'
miRNA:   3'- caUGUAaa--GCgu-GAGCCGGUCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 205684 0.66 0.975256
Target:  5'- -cGCGUggCGCACcCGcGCuCAGucGCGGCg -3'
miRNA:   3'- caUGUAaaGCGUGaGC-CG-GUC--CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 181727 0.66 0.975256
Target:  5'- -gACGcg-CGCACgcuGGCCAaGCGGCc -3'
miRNA:   3'- caUGUaaaGCGUGag-CCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 72237 0.66 0.975256
Target:  5'- cGUGCA---CGUACUUGaGgaAGGCGGCg -3'
miRNA:   3'- -CAUGUaaaGCGUGAGC-CggUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 32103 0.66 0.975256
Target:  5'- aUGCGUUUgGCGgcgcggcugauCUCGGgCAGGUagcgGGCg -3'
miRNA:   3'- cAUGUAAAgCGU-----------GAGCCgGUCCG----CCG- -5'
14621 5' -54.9 NC_003521.1 + 139793 0.66 0.975256
Target:  5'- -gGCG--UCGCcCUCGGC--GGUGGCg -3'
miRNA:   3'- caUGUaaAGCGuGAGCCGguCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 222125 0.66 0.975256
Target:  5'- -cACAgccggaUCGCGC-CGGCCAuGGCGa- -3'
miRNA:   3'- caUGUaa----AGCGUGaGCCGGU-CCGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.