miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 5675 0.7 0.853568
Target:  5'- ------aUCGCGCUCGGaguCCGuGGUGGCg -3'
miRNA:   3'- cauguaaAGCGUGAGCC---GGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 14435 0.73 0.691292
Target:  5'- -gACGUggUGCACaCGGCCcugcGGCGGCg -3'
miRNA:   3'- caUGUAaaGCGUGaGCCGGu---CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 15514 0.66 0.969882
Target:  5'- --------gGCGCUCGGgUuGGCGGCg -3'
miRNA:   3'- cauguaaagCGUGAGCCgGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 24160 0.73 0.720755
Target:  5'- gGUACucgcgggGCACUCGgaaaggagcgaaGCCGGGCGGCa -3'
miRNA:   3'- -CAUGuaaag--CGUGAGC------------CGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 24235 0.67 0.963721
Target:  5'- gGUugGgca-GCGggCGGUCGGGCGGUa -3'
miRNA:   3'- -CAugUaaagCGUgaGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 27268 0.67 0.956731
Target:  5'- aUGCGg--CcCACgaaGGCCAGGCGGg -3'
miRNA:   3'- cAUGUaaaGcGUGag-CCGGUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 27975 0.71 0.837831
Target:  5'- -gGCGg--CGCucaCGGCCAcGGCGGCa -3'
miRNA:   3'- caUGUaaaGCGugaGCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 30515 0.68 0.935407
Target:  5'- --cCAUgUCGCGCUUGGUgAGGaUGGUg -3'
miRNA:   3'- cauGUAaAGCGUGAGCCGgUCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 31814 0.7 0.845793
Target:  5'- -gGCGUUugagCGCcguCUCGGCCcgggcgccgaAGGUGGCg -3'
miRNA:   3'- caUGUAAa---GCGu--GAGCCGG----------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 32103 0.66 0.975256
Target:  5'- aUGCGUUUgGCGgcgcggcugauCUCGGgCAGGUagcgGGCg -3'
miRNA:   3'- cAUGUAAAgCGU-----------GAGCCgGUCCG----CCG- -5'
14621 5' -54.9 NC_003521.1 + 34389 0.69 0.90838
Target:  5'- -aGCAgguggUgGCGCUCgGGCCAGGUgaggaucagcugGGCg -3'
miRNA:   3'- caUGUaa---AgCGUGAG-CCGGUCCG------------CCG- -5'
14621 5' -54.9 NC_003521.1 + 36181 0.69 0.902289
Target:  5'- -gGCGUgcccaCGCACcUGGCCGaGCGGCu -3'
miRNA:   3'- caUGUAaa---GCGUGaGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 36419 0.67 0.952912
Target:  5'- cGUGgAUUUCGCGgUCGGa-GGGCcGCg -3'
miRNA:   3'- -CAUgUAAAGCGUgAGCCggUCCGcCG- -5'
14621 5' -54.9 NC_003521.1 + 36583 0.66 0.966903
Target:  5'- -------aUGCGCgaacUGGCCuGGCGGCg -3'
miRNA:   3'- cauguaaaGCGUGa---GCCGGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 37709 0.78 0.447881
Target:  5'- -cGCAgagUGCcUUUGGCCAGGCGGCg -3'
miRNA:   3'- caUGUaaaGCGuGAGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 39400 0.66 0.977664
Target:  5'- gGUACAgcugguccugUUgGCACa-GGCCguccagucccguAGGCGGCg -3'
miRNA:   3'- -CAUGUa---------AAgCGUGagCCGG------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 42198 0.67 0.963721
Target:  5'- -gGCGUUUC-C-CUgGGCCA-GCGGCu -3'
miRNA:   3'- caUGUAAAGcGuGAgCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 43483 0.67 0.952912
Target:  5'- -gGCGgc-CGUGCU-GGCCGcGGCGGCc -3'
miRNA:   3'- caUGUaaaGCGUGAgCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 44060 0.68 0.925285
Target:  5'- -cGCgg-UCGCGC-CGGCCGgGGCaGCa -3'
miRNA:   3'- caUGuaaAGCGUGaGCCGGU-CCGcCG- -5'
14621 5' -54.9 NC_003521.1 + 44737 0.69 0.900418
Target:  5'- -cGCAUUUCGUGCUgcuggacgccgagaCGGaCCgcggaAGGCGGCc -3'
miRNA:   3'- caUGUAAAGCGUGA--------------GCC-GG-----UCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.