miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 239627 0.66 0.977664
Target:  5'- gGUACAgcugguccugUUgGCACa-GGCCguccagucccguAGGCGGCg -3'
miRNA:   3'- -CAUGUa---------AAgCGUGagCCGG------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 236026 0.67 0.944611
Target:  5'- -aACAUgaUGCACUucgUGGUCAGGCaGCu -3'
miRNA:   3'- caUGUAaaGCGUGA---GCCGGUCCGcCG- -5'
14621 5' -54.9 NC_003521.1 + 229375 0.66 0.977664
Target:  5'- uGUACAcgUCGUucgUGGCCcaaagacacGGGUGGCg -3'
miRNA:   3'- -CAUGUaaAGCGugaGCCGG---------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 226890 0.69 0.882681
Target:  5'- cUGCGggg-GCACcacggCGGCCAGcGCGGCc -3'
miRNA:   3'- cAUGUaaagCGUGa----GCCGGUC-CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 226269 0.67 0.952912
Target:  5'- -cGCAgUUCaggauGCGCUCGGCCGuGGCGu- -3'
miRNA:   3'- caUGUaAAG-----CGUGAGCCGGU-CCGCcg -5'
14621 5' -54.9 NC_003521.1 + 225595 0.69 0.90838
Target:  5'- -gGCGgccUCGCGCUCGGCCGccuGCaGCc -3'
miRNA:   3'- caUGUaa-AGCGUGAGCCGGUc--CGcCG- -5'
14621 5' -54.9 NC_003521.1 + 224593 1.12 0.003597
Target:  5'- gGUACAUUUCGCACUCGGCCAGGCGGCa -3'
miRNA:   3'- -CAUGUAAAGCGUGAGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 224411 0.69 0.889436
Target:  5'- gGUACAccUCGC---CGGCCAGGCGcuGCg -3'
miRNA:   3'- -CAUGUaaAGCGugaGCCGGUCCGC--CG- -5'
14621 5' -54.9 NC_003521.1 + 222687 0.66 0.972665
Target:  5'- -aGCGgcUCGaccuCggugCGGCCGGGCGuGCg -3'
miRNA:   3'- caUGUaaAGCgu--Ga---GCCGGUCCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 222125 0.66 0.975256
Target:  5'- -cACAgccggaUCGCGC-CGGCCAuGGCGa- -3'
miRNA:   3'- caUGUaa----AGCGUGaGCCGGU-CCGCcg -5'
14621 5' -54.9 NC_003521.1 + 221902 0.68 0.919879
Target:  5'- -gACGUgaaUCGaaacCUCgGGCCAGGCGuGCg -3'
miRNA:   3'- caUGUAa--AGCgu--GAG-CCGGUCCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 219443 0.69 0.882681
Target:  5'- -aGCGc-UCGCacaGCUCGGUCAGcuGCGGCa -3'
miRNA:   3'- caUGUaaAGCG---UGAGCCGGUC--CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 218610 0.68 0.930966
Target:  5'- gGUACGguucggccgccagCGCGCggcgguaagCGGCCAcggccGGCGGCg -3'
miRNA:   3'- -CAUGUaaa----------GCGUGa--------GCCGGU-----CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 216357 0.66 0.969882
Target:  5'- -aGCA---CGCGCU-GGCCAGGCaGaGCa -3'
miRNA:   3'- caUGUaaaGCGUGAgCCGGUCCG-C-CG- -5'
14621 5' -54.9 NC_003521.1 + 214198 0.66 0.971018
Target:  5'- -aACGUgcCGCACguccugaaagaggaCGGCCAGGauGCa -3'
miRNA:   3'- caUGUAaaGCGUGa-------------GCCGGUCCgcCG- -5'
14621 5' -54.9 NC_003521.1 + 213053 0.67 0.959982
Target:  5'- aGUAgGUUUcuuccucCGCGCUCGGC--GGaCGGCa -3'
miRNA:   3'- -CAUgUAAA-------GCGUGAGCCGguCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 212536 0.66 0.977664
Target:  5'- cUGCuc-UCGUugUCGGUguGGCuGCu -3'
miRNA:   3'- cAUGuaaAGCGugAGCCGguCCGcCG- -5'
14621 5' -54.9 NC_003521.1 + 210417 0.7 0.845793
Target:  5'- -cGCAg--CGUGgUCGGCgUGGGCGGCg -3'
miRNA:   3'- caUGUaaaGCGUgAGCCG-GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 209541 0.69 0.895973
Target:  5'- -cGCGguuaUGCGCcCGGCgGGGUGGCg -3'
miRNA:   3'- caUGUaaa-GCGUGaGCCGgUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 208930 0.67 0.963721
Target:  5'- -cGCAgUUCcuGUGCcgCGGCCuGGCGGUg -3'
miRNA:   3'- caUGUaAAG--CGUGa-GCCGGuCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.