miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 214198 0.66 0.971018
Target:  5'- -aACGUgcCGCACguccugaaagaggaCGGCCAGGauGCa -3'
miRNA:   3'- caUGUAaaGCGUGa-------------GCCGGUCCgcCG- -5'
14621 5' -54.9 NC_003521.1 + 85738 0.66 0.975006
Target:  5'- cUGCAg--CGCcgcgaACUUGGCCaugagcgAGGUGGCc -3'
miRNA:   3'- cAUGUaaaGCG-----UGAGCCGG-------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 139793 0.66 0.975256
Target:  5'- -gGCG--UCGCcCUCGGC--GGUGGCg -3'
miRNA:   3'- caUGUaaAGCGuGAGCCGguCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 72237 0.66 0.975256
Target:  5'- cGUGCA---CGUACUUGaGgaAGGCGGCg -3'
miRNA:   3'- -CAUGUaaaGCGUGAGC-CggUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 116604 0.66 0.969882
Target:  5'- cUGCAagUCGCug-CGGCCcgacaAGGUGGUg -3'
miRNA:   3'- cAUGUaaAGCGugaGCCGG-----UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 216357 0.66 0.969882
Target:  5'- -aGCA---CGCGCU-GGCCAGGCaGaGCa -3'
miRNA:   3'- caUGUaaaGCGUGAgCCGGUCCG-C-CG- -5'
14621 5' -54.9 NC_003521.1 + 156669 0.66 0.966903
Target:  5'- -aACGUcUCGCGCUUcGUCAGuCGGCu -3'
miRNA:   3'- caUGUAaAGCGUGAGcCGGUCcGCCG- -5'
14621 5' -54.9 NC_003521.1 + 152594 0.66 0.971018
Target:  5'- aGUACAcgaUgGCcucCUCGGCgcccugguuggucacCAGGCGGCg -3'
miRNA:   3'- -CAUGUaa-AgCGu--GAGCCG---------------GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 50305 0.66 0.966903
Target:  5'- -cGCAccUCGCucCUCaGCCAGGgaGGCa -3'
miRNA:   3'- caUGUaaAGCGu-GAGcCGGUCCg-CCG- -5'
14621 5' -54.9 NC_003521.1 + 70307 0.66 0.969882
Target:  5'- gGUGCAggUCGCccagCaGCgAGGCGGUg -3'
miRNA:   3'- -CAUGUaaAGCGuga-GcCGgUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 222687 0.66 0.972665
Target:  5'- -aGCGgcUCGaccuCggugCGGCCGGGCGuGCg -3'
miRNA:   3'- caUGUaaAGCgu--Ga---GCCGGUCCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 87870 0.66 0.966903
Target:  5'- -cGCAg---GCGCU-GGCCAGGCcguuGGCg -3'
miRNA:   3'- caUGUaaagCGUGAgCCGGUCCG----CCG- -5'
14621 5' -54.9 NC_003521.1 + 166764 0.66 0.969882
Target:  5'- -gACAgcggCGCgugaGCUCGGgaCAGGCGGg -3'
miRNA:   3'- caUGUaaa-GCG----UGAGCCg-GUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 112420 0.66 0.96721
Target:  5'- -cGCcUUUCGgACcgacgcccgcucaggCGGcCCAGGCGGCc -3'
miRNA:   3'- caUGuAAAGCgUGa--------------GCC-GGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 197441 0.66 0.969882
Target:  5'- --------gGC-CaUGGCCAGGCGGCg -3'
miRNA:   3'- cauguaaagCGuGaGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 32103 0.66 0.975256
Target:  5'- aUGCGUUUgGCGgcgcggcugauCUCGGgCAGGUagcgGGCg -3'
miRNA:   3'- cAUGUAAAgCGU-----------GAGCCgGUCCG----CCG- -5'
14621 5' -54.9 NC_003521.1 + 39400 0.66 0.977664
Target:  5'- gGUACAgcugguccugUUgGCACa-GGCCguccagucccguAGGCGGCg -3'
miRNA:   3'- -CAUGUa---------AAgCGUGagCCGG------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 85900 0.66 0.975256
Target:  5'- -gACAUgaccCGacuCUUGGUCAGGuCGGCg -3'
miRNA:   3'- caUGUAaa--GCgu-GAGCCGGUCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 57612 0.66 0.971018
Target:  5'- -aGCGUgccgUCGCGCUCcaggcacgucacgggGGCCgaaacgggacGGGaCGGCg -3'
miRNA:   3'- caUGUAa---AGCGUGAG---------------CCGG----------UCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 199663 0.66 0.969882
Target:  5'- -aGCAgagUCGCGua-GGCCAGuagucGCGGCg -3'
miRNA:   3'- caUGUaa-AGCGUgagCCGGUC-----CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.