miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 224593 1.12 0.003597
Target:  5'- gGUACAUUUCGCACUCGGCCAGGCGGCa -3'
miRNA:   3'- -CAUGUAAAGCGUGAGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 108624 0.8 0.355908
Target:  5'- -gGCA---CGUugUUGGCCAGGCGGCu -3'
miRNA:   3'- caUGUaaaGCGugAGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 148614 0.79 0.396042
Target:  5'- -cACAgcgcUCGuCGCgCGGCCGGGCGGCg -3'
miRNA:   3'- caUGUaa--AGC-GUGaGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 197866 0.78 0.447881
Target:  5'- -gGCGggUCGCGCUCgcugGGCugCAGGCGGCa -3'
miRNA:   3'- caUGUaaAGCGUGAG----CCG--GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 37709 0.78 0.447881
Target:  5'- -cGCAgagUGCcUUUGGCCAGGCGGCg -3'
miRNA:   3'- caUGUaaaGCGuGAGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 180200 0.77 0.512793
Target:  5'- gGUACAgguacUCGCGCUCGGCguuGGUGGUg -3'
miRNA:   3'- -CAUGUaa---AGCGUGAGCCGgu-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 150959 0.76 0.551583
Target:  5'- cGUGCAg-UCGCGCgacgCGGCgCuGGCGGCc -3'
miRNA:   3'- -CAUGUaaAGCGUGa---GCCG-GuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 46398 0.75 0.601212
Target:  5'- gGUGCGUggggCGCGCg-GGCCAGgaaGCGGCg -3'
miRNA:   3'- -CAUGUAaa--GCGUGagCCGGUC---CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 98888 0.75 0.621263
Target:  5'- -gGCGcccaCGCGCUgcaCGGUCAGGCGGCu -3'
miRNA:   3'- caUGUaaa-GCGUGA---GCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 204630 0.75 0.621263
Target:  5'- -aGCGUUUgaGcCGCUCGGCCAGGUgcgugGGCa -3'
miRNA:   3'- caUGUAAAg-C-GUGAGCCGGUCCG-----CCG- -5'
14621 5' -54.9 NC_003521.1 + 145257 0.75 0.631304
Target:  5'- cUGCAgggCGCcucCUCGGCCucGGCGGCc -3'
miRNA:   3'- cAUGUaaaGCGu--GAGCCGGu-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 121801 0.74 0.641346
Target:  5'- gGUAC---UUGCGCUCGGCCGuGGUGGg -3'
miRNA:   3'- -CAUGuaaAGCGUGAGCCGGU-CCGCCg -5'
14621 5' -54.9 NC_003521.1 + 131086 0.74 0.651381
Target:  5'- -cGCGgcUCGCGCgggcuccggaCGGCgGGGCGGCg -3'
miRNA:   3'- caUGUaaAGCGUGa---------GCCGgUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 86162 0.74 0.661401
Target:  5'- -aGCGUcUCGCugccggcCUCGGCCA-GCGGCa -3'
miRNA:   3'- caUGUAaAGCGu------GAGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 124451 0.74 0.671398
Target:  5'- -cACGUcgCGCggcagcagcaGCUCGGCCucgucGGGCGGCu -3'
miRNA:   3'- caUGUAaaGCG----------UGAGCCGG-----UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 151308 0.74 0.671398
Target:  5'- -gACGcg-CGCAaggCGGCCAGGCGGg -3'
miRNA:   3'- caUGUaaaGCGUga-GCCGGUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 153438 0.74 0.671398
Target:  5'- -aGCAgccggUCGCGCUCguaGGCCA-GCGGCu -3'
miRNA:   3'- caUGUaa---AGCGUGAG---CCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 14435 0.73 0.691292
Target:  5'- -gACGUggUGCACaCGGCCcugcGGCGGCg -3'
miRNA:   3'- caUGUAaaGCGUGaGCCGGu---CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 120847 0.73 0.710996
Target:  5'- gGUGcCAUgcUGgACUCGGCCuugAGGCGGCc -3'
miRNA:   3'- -CAU-GUAaaGCgUGAGCCGG---UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 91982 0.73 0.710996
Target:  5'- gGUGCAcggcaCGCAcCUCGGCCgaGGGCaGGCg -3'
miRNA:   3'- -CAUGUaaa--GCGU-GAGCCGG--UCCG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.