miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 46614 0.7 0.845793
Target:  5'- -aACAUgacgaCGUcCUCaGCCAGGCGGUa -3'
miRNA:   3'- caUGUAaa---GCGuGAGcCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 106453 0.72 0.767355
Target:  5'- -cGCAguagCGCAuguugagcgacuuCUCGGCCAgcaucGGCGGCg -3'
miRNA:   3'- caUGUaaa-GCGU-------------GAGCCGGU-----CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 175790 0.72 0.77747
Target:  5'- -gGCAUaccccacaGC-CUCGGCCcuGGGCGGCa -3'
miRNA:   3'- caUGUAaag-----CGuGAGCCGG--UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 101903 0.72 0.786535
Target:  5'- uGUACAUguagggcaggCGCACcgagCGGCCGuGGUGGUa -3'
miRNA:   3'- -CAUGUAaa--------GCGUGa---GCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 103836 0.71 0.795466
Target:  5'- uGUACAggggcCGCGuCUCGGCCucguccAGGCuGGCg -3'
miRNA:   3'- -CAUGUaaa--GCGU-GAGCCGG------UCCG-CCG- -5'
14621 5' -54.9 NC_003521.1 + 76951 0.71 0.801633
Target:  5'- gGUGCGUUccaGCAUgucgCGGCCGaugcgcgugaugcuGGCGGCg -3'
miRNA:   3'- -CAUGUAAag-CGUGa---GCCGGU--------------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 117212 0.71 0.812893
Target:  5'- gGUGgAgaugUCGCACccgcugaCGGCCGcGGCGGCu -3'
miRNA:   3'- -CAUgUaa--AGCGUGa------GCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 127541 0.71 0.821374
Target:  5'- uGUGCGgcggcaGCACgccgUCGGCCAGGUgcucGGCg -3'
miRNA:   3'- -CAUGUaaag--CGUG----AGCCGGUCCG----CCG- -5'
14621 5' -54.9 NC_003521.1 + 27975 0.71 0.837831
Target:  5'- -gGCGg--CGCucaCGGCCAcGGCGGCa -3'
miRNA:   3'- caUGUaaaGCGugaGCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 60675 0.73 0.743863
Target:  5'- aUGCucUUCGUGCUgCGGCCgcgcgggggacccggGGGCGGCg -3'
miRNA:   3'- cAUGuaAAGCGUGA-GCCGG---------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 103217 0.73 0.720755
Target:  5'- cUGgAUgaggUCGC---CGGCCAGGCGGCg -3'
miRNA:   3'- cAUgUAa---AGCGugaGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 24160 0.73 0.720755
Target:  5'- gGUACucgcgggGCACUCGgaaaggagcgaaGCCGGGCGGCa -3'
miRNA:   3'- -CAUGuaaag--CGUGAGC------------CGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 148614 0.79 0.396042
Target:  5'- -cACAgcgcUCGuCGCgCGGCCGGGCGGCg -3'
miRNA:   3'- caUGUaa--AGC-GUGaGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 150959 0.76 0.551583
Target:  5'- cGUGCAg-UCGCGCgacgCGGCgCuGGCGGCc -3'
miRNA:   3'- -CAUGUaaAGCGUGa---GCCG-GuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 145257 0.75 0.631304
Target:  5'- cUGCAgggCGCcucCUCGGCCucGGCGGCc -3'
miRNA:   3'- cAUGUaaaGCGu--GAGCCGGu-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 121801 0.74 0.641346
Target:  5'- gGUAC---UUGCGCUCGGCCGuGGUGGg -3'
miRNA:   3'- -CAUGuaaAGCGUGAGCCGGU-CCGCCg -5'
14621 5' -54.9 NC_003521.1 + 131086 0.74 0.651381
Target:  5'- -cGCGgcUCGCGCgggcuccggaCGGCgGGGCGGCg -3'
miRNA:   3'- caUGUaaAGCGUGa---------GCCGgUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 151308 0.74 0.671398
Target:  5'- -gACGcg-CGCAaggCGGCCAGGCGGg -3'
miRNA:   3'- caUGUaaaGCGUga-GCCGGUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 153438 0.74 0.671398
Target:  5'- -aGCAgccggUCGCGCUCguaGGCCA-GCGGCu -3'
miRNA:   3'- caUGUaa---AGCGUGAG---CCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 120847 0.73 0.710996
Target:  5'- gGUGcCAUgcUGgACUCGGCCuugAGGCGGCc -3'
miRNA:   3'- -CAU-GUAaaGCgUGAGCCGG---UCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.