miRNA display CGI


Results 41 - 60 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 3' -58.4 NC_003521.1 + 186252 0.66 0.884957
Target:  5'- aGUGGAuCGGGCCGcacaccCGCGUCAaGCg -3'
miRNA:   3'- aCAUCUcGUCCGGCauc---GCGCGGU-CG- -5'
14622 3' -58.4 NC_003521.1 + 33203 0.66 0.884957
Target:  5'- --aGGuGCAGGCCGgcgAGC-CGcCCAGa -3'
miRNA:   3'- acaUCuCGUCCGGCa--UCGcGC-GGUCg -5'
14622 3' -58.4 NC_003521.1 + 17217 0.66 0.882947
Target:  5'- --aAGAGCGucGCCGUcGCGCgguauggcaagcgaGCCGGCg -3'
miRNA:   3'- acaUCUCGUc-CGGCAuCGCG--------------CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 104046 0.66 0.878183
Target:  5'- cGU-GAGCccGCUGUcGCGCagguagGCCAGCa -3'
miRNA:   3'- aCAuCUCGucCGGCAuCGCG------CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 112841 0.66 0.878183
Target:  5'- gUGgcGGGCGucauGGCCG-AGCuGCcCCAGCu -3'
miRNA:   3'- -ACauCUCGU----CCGGCaUCG-CGcGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 44244 0.66 0.878183
Target:  5'- uUGgcGAGCAGGUCGg---GCGUCGGg -3'
miRNA:   3'- -ACauCUCGUCCGGCaucgCGCGGUCg -5'
14622 3' -58.4 NC_003521.1 + 33264 0.66 0.871204
Target:  5'- ----cAGCAGGCCGgcGCGauCGUgCAGCa -3'
miRNA:   3'- acaucUCGUCCGGCauCGC--GCG-GUCG- -5'
14622 3' -58.4 NC_003521.1 + 150929 0.66 0.871204
Target:  5'- cGgcGuGUGGGCCG-AGCGCgGUCAGa -3'
miRNA:   3'- aCauCuCGUCCGGCaUCGCG-CGGUCg -5'
14622 3' -58.4 NC_003521.1 + 150791 0.66 0.871204
Target:  5'- ---cGGGCGGGCgCG-AGC-CGCCAGg -3'
miRNA:   3'- acauCUCGUCCG-GCaUCGcGCGGUCg -5'
14622 3' -58.4 NC_003521.1 + 77760 0.66 0.871204
Target:  5'- gGUuGGGCAGGauGUAGuCGCGgCAGg -3'
miRNA:   3'- aCAuCUCGUCCggCAUC-GCGCgGUCg -5'
14622 3' -58.4 NC_003521.1 + 148961 0.66 0.871204
Target:  5'- cUGgAGGGCAGcGCCaucauccGCGUGCUGGCg -3'
miRNA:   3'- -ACaUCUCGUC-CGGcau----CGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 197181 0.66 0.871204
Target:  5'- --cAGGGCuggAGGCgGUGGCGgucCCAGCg -3'
miRNA:   3'- acaUCUCG---UCCGgCAUCGCgc-GGUCG- -5'
14622 3' -58.4 NC_003521.1 + 55728 0.66 0.871204
Target:  5'- cGgcGcGCAGcGCCucccAGCGCGCgGGCg -3'
miRNA:   3'- aCauCuCGUC-CGGca--UCGCGCGgUCG- -5'
14622 3' -58.4 NC_003521.1 + 214504 0.66 0.871204
Target:  5'- cUGgAGAGCcGGCCcuggaAGCGCGgaCAGCg -3'
miRNA:   3'- -ACaUCUCGuCCGGca---UCGCGCg-GUCG- -5'
14622 3' -58.4 NC_003521.1 + 165268 0.66 0.871204
Target:  5'- --gAGGGCGcuGG-CGUAGcCGcCGCCGGCg -3'
miRNA:   3'- acaUCUCGU--CCgGCAUC-GC-GCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 165833 0.66 0.871204
Target:  5'- cGUAGGGCgagauguccAGGCa--GGUGUGCUGGCg -3'
miRNA:   3'- aCAUCUCG---------UCCGgcaUCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 104680 0.66 0.871204
Target:  5'- ----cAGCAGGUgGUggcGGCGCGCCAc- -3'
miRNA:   3'- acaucUCGUCCGgCA---UCGCGCGGUcg -5'
14622 3' -58.4 NC_003521.1 + 15324 0.66 0.871204
Target:  5'- ---cGAGCGGGUgaucAGCGCGCUGGUg -3'
miRNA:   3'- acauCUCGUCCGgca-UCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 29401 0.66 0.871204
Target:  5'- cUGUGGAGCucGUUucacgauGUGCGCCGGCu -3'
miRNA:   3'- -ACAUCUCGucCGGcau----CGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 30931 0.66 0.870495
Target:  5'- -cUGGGGCAGucgccguGCCGUAGguaGUGCCAaGCc -3'
miRNA:   3'- acAUCUCGUC-------CGGCAUCg--CGCGGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.