miRNA display CGI


Results 21 - 40 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 3' -58.4 NC_003521.1 + 165970 0.66 0.891525
Target:  5'- aUGUcGuGCAGGUCGUgcAGCGUGa-GGCg -3'
miRNA:   3'- -ACAuCuCGUCCGGCA--UCGCGCggUCG- -5'
14622 3' -58.4 NC_003521.1 + 140618 0.66 0.891525
Target:  5'- ---cGAGgAGGCCGUaaauauGGCGCucgugGCCuGCg -3'
miRNA:   3'- acauCUCgUCCGGCA------UCGCG-----CGGuCG- -5'
14622 3' -58.4 NC_003521.1 + 204930 0.66 0.891525
Target:  5'- --aAGuGCGuGCCGUGGCaccgGCCAGCg -3'
miRNA:   3'- acaUCuCGUcCGGCAUCGcg--CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 124101 0.66 0.891525
Target:  5'- cGUGG-GCGGGaaGcAGCGCGUC-GCu -3'
miRNA:   3'- aCAUCuCGUCCggCaUCGCGCGGuCG- -5'
14622 3' -58.4 NC_003521.1 + 197489 0.66 0.891525
Target:  5'- ----cGGCGGGCCGgacGGCGCGgagCAGUg -3'
miRNA:   3'- acaucUCGUCCGGCa--UCGCGCg--GUCG- -5'
14622 3' -58.4 NC_003521.1 + 129908 0.66 0.891525
Target:  5'- --cGGGGC-GGCC---GCGCGCCuGCu -3'
miRNA:   3'- acaUCUCGuCCGGcauCGCGCGGuCG- -5'
14622 3' -58.4 NC_003521.1 + 31700 0.66 0.891525
Target:  5'- aGUGGGGCGgcGGCagcauGUGCGCguGCu -3'
miRNA:   3'- aCAUCUCGU--CCGgcau-CGCGCGguCG- -5'
14622 3' -58.4 NC_003521.1 + 195683 0.66 0.891525
Target:  5'- gGUcccAGUAGGUaCGUAGCaGCGCCcGCa -3'
miRNA:   3'- aCAuc-UCGUCCG-GCAUCG-CGCGGuCG- -5'
14622 3' -58.4 NC_003521.1 + 119093 0.66 0.88761
Target:  5'- gGUGuGGCAGGCgcgccugacCGUgucuaaccuaucgugGGCGCGgCAGCa -3'
miRNA:   3'- aCAUcUCGUCCG---------GCA---------------UCGCGCgGUCG- -5'
14622 3' -58.4 NC_003521.1 + 177521 0.66 0.884957
Target:  5'- --gAGAGguGGuuGaUGGCGUGgaUCAGCa -3'
miRNA:   3'- acaUCUCguCCggC-AUCGCGC--GGUCG- -5'
14622 3' -58.4 NC_003521.1 + 142897 0.66 0.884957
Target:  5'- uUGgAGAGCGGcGCCaucagccGGCGaCGUCGGCg -3'
miRNA:   3'- -ACaUCUCGUC-CGGca-----UCGC-GCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 200398 0.66 0.884957
Target:  5'- ---cGAGCAccuGGCCGUGGUG-GaCAGCa -3'
miRNA:   3'- acauCUCGU---CCGGCAUCGCgCgGUCG- -5'
14622 3' -58.4 NC_003521.1 + 176781 0.66 0.884957
Target:  5'- cGUuGAGCAccuccagcaccuGGUCGaUGGUGCGCUccAGCg -3'
miRNA:   3'- aCAuCUCGU------------CCGGC-AUCGCGCGG--UCG- -5'
14622 3' -58.4 NC_003521.1 + 48705 0.66 0.884957
Target:  5'- --cGGAGCcgacgAGGCCGggagaGGUGgagaCGCCGGCg -3'
miRNA:   3'- acaUCUCG-----UCCGGCa----UCGC----GCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 157038 0.66 0.884957
Target:  5'- --gGGGGCGcGGUCGgaggAGCGCGgCGGg -3'
miRNA:   3'- acaUCUCGU-CCGGCa---UCGCGCgGUCg -5'
14622 3' -58.4 NC_003521.1 + 185731 0.66 0.884957
Target:  5'- gUGcGGAGguGaucGCCGagcgGGUGCGCCGGa -3'
miRNA:   3'- -ACaUCUCguC---CGGCa---UCGCGCGGUCg -5'
14622 3' -58.4 NC_003521.1 + 186252 0.66 0.884957
Target:  5'- aGUGGAuCGGGCCGcacaccCGCGUCAaGCg -3'
miRNA:   3'- aCAUCUcGUCCGGCauc---GCGCGGU-CG- -5'
14622 3' -58.4 NC_003521.1 + 33203 0.66 0.884957
Target:  5'- --aGGuGCAGGCCGgcgAGC-CGcCCAGa -3'
miRNA:   3'- acaUCuCGUCCGGCa--UCGcGC-GGUCg -5'
14622 3' -58.4 NC_003521.1 + 54309 0.66 0.884957
Target:  5'- cGUAGAGCAGcgcGUCGUgcuccgucaccaGGCGCacgguGCaCGGCa -3'
miRNA:   3'- aCAUCUCGUC---CGGCA------------UCGCG-----CG-GUCG- -5'
14622 3' -58.4 NC_003521.1 + 211915 0.66 0.884957
Target:  5'- --aAGAGCAcGuuGUAGuCGCG-CAGCg -3'
miRNA:   3'- acaUCUCGUcCggCAUC-GCGCgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.