miRNA display CGI


Results 21 - 40 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 3' -58.4 NC_003521.1 + 29401 0.66 0.871204
Target:  5'- cUGUGGAGCucGUUucacgauGUGCGCCGGCu -3'
miRNA:   3'- -ACAUCUCGucCGGcau----CGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 30578 0.69 0.727234
Target:  5'- gGUAGGGCAGGUCcaAGUGcCGUCcGCg -3'
miRNA:   3'- aCAUCUCGUCCGGcaUCGC-GCGGuCG- -5'
14622 3' -58.4 NC_003521.1 + 30787 0.66 0.89788
Target:  5'- -cUGGAuGUGGGCgCgGUAGCGCaccgagggcccGCCGGCg -3'
miRNA:   3'- acAUCU-CGUCCG-G-CAUCGCG-----------CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 30931 0.66 0.870495
Target:  5'- -cUGGGGCAGucgccguGCCGUAGguaGUGCCAaGCc -3'
miRNA:   3'- acAUCUCGUC-------CGGCAUCg--CGCGGU-CG- -5'
14622 3' -58.4 NC_003521.1 + 31427 0.71 0.649463
Target:  5'- cGUGcAGCAGGCgGaugaugcGCaGCGCCAGCa -3'
miRNA:   3'- aCAUcUCGUCCGgCau-----CG-CGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 31550 0.67 0.833429
Target:  5'- gUGUAcuGgAGGCCGaaUGGCGCGuCCGGg -3'
miRNA:   3'- -ACAUcuCgUCCGGC--AUCGCGC-GGUCg -5'
14622 3' -58.4 NC_003521.1 + 31700 0.66 0.891525
Target:  5'- aGUGGGGCGgcGGCagcauGUGCGCguGCu -3'
miRNA:   3'- aCAUCUCGU--CCGgcau-CGCGCGguCG- -5'
14622 3' -58.4 NC_003521.1 + 33203 0.66 0.884957
Target:  5'- --aGGuGCAGGCCGgcgAGC-CGcCCAGa -3'
miRNA:   3'- acaUCuCGUCCGGCa--UCGcGC-GGUCg -5'
14622 3' -58.4 NC_003521.1 + 33264 0.66 0.871204
Target:  5'- ----cAGCAGGCCGgcGCGauCGUgCAGCa -3'
miRNA:   3'- acaucUCGUCCGGCauCGC--GCG-GUCG- -5'
14622 3' -58.4 NC_003521.1 + 33633 0.67 0.849093
Target:  5'- --cAGcaaCAGGCCGUGGagggGCGgCCAGCa -3'
miRNA:   3'- acaUCuc-GUCCGGCAUCg---CGC-GGUCG- -5'
14622 3' -58.4 NC_003521.1 + 34388 0.68 0.773625
Target:  5'- ----cAGCAGGUgGUGGCGCucggGCCAGg -3'
miRNA:   3'- acaucUCGUCCGgCAUCGCG----CGGUCg -5'
14622 3' -58.4 NC_003521.1 + 34516 0.74 0.45834
Target:  5'- gGUAGcggccGCGGGCCG-AGaCGCGCgAGCg -3'
miRNA:   3'- aCAUCu----CGUCCGGCaUC-GCGCGgUCG- -5'
14622 3' -58.4 NC_003521.1 + 36810 0.76 0.351211
Target:  5'- ---cGGGCAGGCCGUGaucacGCGCcacggGCCGGCg -3'
miRNA:   3'- acauCUCGUCCGGCAU-----CGCG-----CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 38324 0.7 0.708086
Target:  5'- gGUAGAGguGGCCGUccugggggcaguAGC-CGaagaCGGCa -3'
miRNA:   3'- aCAUCUCguCCGGCA------------UCGcGCg---GUCG- -5'
14622 3' -58.4 NC_003521.1 + 38466 0.72 0.590362
Target:  5'- cGUcuGGGCucuGGCgGUGG-GCGCCGGCg -3'
miRNA:   3'- aCAu-CUCGu--CCGgCAUCgCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 38584 0.69 0.729133
Target:  5'- uUGUGGGGCGcgacgccGugucccuggguguucGCCGUaugcguuauuagaGGCGCGCCGGCu -3'
miRNA:   3'- -ACAUCUCGU-------C---------------CGGCA-------------UCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 39009 0.68 0.773625
Target:  5'- aUGUGGcgcuGCAcGGCCGUcAGCaGCGaCGGCg -3'
miRNA:   3'- -ACAUCu---CGU-CCGGCA-UCG-CGCgGUCG- -5'
14622 3' -58.4 NC_003521.1 + 39437 0.68 0.808675
Target:  5'- cGUAG-GCGGcGCCGUGGCucccggggaCGgCAGCg -3'
miRNA:   3'- aCAUCuCGUC-CGGCAUCGc--------GCgGUCG- -5'
14622 3' -58.4 NC_003521.1 + 39542 0.66 0.864026
Target:  5'- -cUGGcGCAGGUCgGUGGCcccgaCGCCGGCc -3'
miRNA:   3'- acAUCuCGUCCGG-CAUCGc----GCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 43239 0.7 0.688699
Target:  5'- --cGGGGaaGGGCgaGUAGCaGCGCCAGCu -3'
miRNA:   3'- acaUCUCg-UCCGg-CAUCG-CGCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.