miRNA display CGI


Results 21 - 40 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 3' -58.4 NC_003521.1 + 129908 0.66 0.891525
Target:  5'- --cGGGGC-GGCC---GCGCGCCuGCu -3'
miRNA:   3'- acaUCUCGuCCGGcauCGCGCGGuCG- -5'
14622 3' -58.4 NC_003521.1 + 17217 0.66 0.882947
Target:  5'- --aAGAGCGucGCCGUcGCGCgguauggcaagcgaGCCGGCg -3'
miRNA:   3'- acaUCUCGUc-CGGCAuCGCG--------------CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 179240 0.66 0.89788
Target:  5'- -----cGCGGGCCuucUGGCGCcugaacucgccgGCCAGCa -3'
miRNA:   3'- acaucuCGUCCGGc--AUCGCG------------CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 77760 0.66 0.871204
Target:  5'- gGUuGGGCAGGauGUAGuCGCGgCAGg -3'
miRNA:   3'- aCAuCUCGUCCggCAUC-GCGCgGUCg -5'
14622 3' -58.4 NC_003521.1 + 127780 0.66 0.864026
Target:  5'- aGUcGGGCGgcGGCCGUAGC-CGCacguGCu -3'
miRNA:   3'- aCAuCUCGU--CCGGCAUCGcGCGgu--CG- -5'
14622 3' -58.4 NC_003521.1 + 39542 0.66 0.864026
Target:  5'- -cUGGcGCAGGUCgGUGGCcccgaCGCCGGCc -3'
miRNA:   3'- acAUCuCGUCCGG-CAUCGc----GCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 197181 0.66 0.871204
Target:  5'- --cAGGGCuggAGGCgGUGGCGgucCCAGCg -3'
miRNA:   3'- acaUCUCG---UCCGgCAUCGCgc-GGUCG- -5'
14622 3' -58.4 NC_003521.1 + 115765 0.66 0.861834
Target:  5'- --aAGGGaucagaAGGCCgGUgugacggcgcacgaAGCGCGUCAGCa -3'
miRNA:   3'- acaUCUCg-----UCCGG-CA--------------UCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 169347 0.66 0.864026
Target:  5'- --aGGAcCAGuCgCGUcGGCGCGCCAGCa -3'
miRNA:   3'- acaUCUcGUCcG-GCA-UCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 102865 0.66 0.89788
Target:  5'- cGUAG-GUcuGGGCCGUgcguagcgaGGCGCagagGCgCAGCa -3'
miRNA:   3'- aCAUCuCG--UCCGGCA---------UCGCG----CG-GUCG- -5'
14622 3' -58.4 NC_003521.1 + 30787 0.66 0.89788
Target:  5'- -cUGGAuGUGGGCgCgGUAGCGCaccgagggcccGCCGGCg -3'
miRNA:   3'- acAUCU-CGUCCG-G-CAUCGCG-----------CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 96855 0.66 0.900362
Target:  5'- -aUGGGGCggaAGGCCGggugguagcacucGCGCaGCCGGUg -3'
miRNA:   3'- acAUCUCG---UCCGGCau-----------CGCG-CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 223725 0.66 0.861834
Target:  5'- gGUAcgacGGCGGGuCCgGUGGCGggaacgugggucgcCGCCAGCg -3'
miRNA:   3'- aCAUc---UCGUCC-GG-CAUCGC--------------GCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 84654 0.66 0.891525
Target:  5'- cGgcGAGaugccgcaCAGGCguCGcAGCaGCGCCAGCa -3'
miRNA:   3'- aCauCUC--------GUCCG--GCaUCG-CGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 145702 0.66 0.884957
Target:  5'- --cGGAGCuuucaAGGCCacgcucaAGCGCGCgCGGCc -3'
miRNA:   3'- acaUCUCG-----UCCGGca-----UCGCGCG-GUCG- -5'
14622 3' -58.4 NC_003521.1 + 112841 0.66 0.878183
Target:  5'- gUGgcGGGCGucauGGCCG-AGCuGCcCCAGCu -3'
miRNA:   3'- -ACauCUCGU----CCGGCaUCG-CGcGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 124101 0.66 0.891525
Target:  5'- cGUGG-GCGGGaaGcAGCGCGUC-GCu -3'
miRNA:   3'- aCAUCuCGUCCggCaUCGCGCGGuCG- -5'
14622 3' -58.4 NC_003521.1 + 197437 0.66 0.89788
Target:  5'- --aAGAgGCcauGGCCa-GGCgGCGCCAGCg -3'
miRNA:   3'- acaUCU-CGu--CCGGcaUCG-CGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 195683 0.66 0.891525
Target:  5'- gGUcccAGUAGGUaCGUAGCaGCGCCcGCa -3'
miRNA:   3'- aCAuc-UCGUCCG-GCAUCG-CGCGGuCG- -5'
14622 3' -58.4 NC_003521.1 + 54309 0.66 0.884957
Target:  5'- cGUAGAGCAGcgcGUCGUgcuccgucaccaGGCGCacgguGCaCGGCa -3'
miRNA:   3'- aCAUCUCGUC---CGGCA------------UCGCG-----CG-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.