miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 3' -58.4 NC_003521.1 + 169347 0.66 0.864026
Target:  5'- --aGGAcCAGuCgCGUcGGCGCGCCAGCa -3'
miRNA:   3'- acaUCUcGUCcG-GCA-UCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 96855 0.66 0.900362
Target:  5'- -aUGGGGCggaAGGCCGggugguagcacucGCGCaGCCGGUg -3'
miRNA:   3'- acAUCUCG---UCCGGCau-----------CGCG-CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 183898 0.66 0.884957
Target:  5'- cUGcAGAGCcacGGCCGUcacGGCGCuguaCCGGUg -3'
miRNA:   3'- -ACaUCUCGu--CCGGCA---UCGCGc---GGUCG- -5'
14622 3' -58.4 NC_003521.1 + 55728 0.66 0.871204
Target:  5'- cGgcGcGCAGcGCCucccAGCGCGCgGGCg -3'
miRNA:   3'- aCauCuCGUC-CGGca--UCGCGCGgUCG- -5'
14622 3' -58.4 NC_003521.1 + 33203 0.66 0.884957
Target:  5'- --aGGuGCAGGCCGgcgAGC-CGcCCAGa -3'
miRNA:   3'- acaUCuCGUCCGGCa--UCGcGC-GGUCg -5'
14622 3' -58.4 NC_003521.1 + 30931 0.66 0.870495
Target:  5'- -cUGGGGCAGucgccguGCCGUAGguaGUGCCAaGCc -3'
miRNA:   3'- acAUCUCGUC-------CGGCAUCg--CGCGGU-CG- -5'
14622 3' -58.4 NC_003521.1 + 148961 0.66 0.871204
Target:  5'- cUGgAGGGCAGcGCCaucauccGCGUGCUGGCg -3'
miRNA:   3'- -ACaUCUCGUC-CGGcau----CGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 115765 0.66 0.861834
Target:  5'- --aAGGGaucagaAGGCCgGUgugacggcgcacgaAGCGCGUCAGCa -3'
miRNA:   3'- acaUCUCg-----UCCGG-CA--------------UCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 17217 0.66 0.882947
Target:  5'- --aAGAGCGucGCCGUcGCGCgguauggcaagcgaGCCGGCg -3'
miRNA:   3'- acaUCUCGUc-CGGCAuCGCG--------------CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 77760 0.66 0.871204
Target:  5'- gGUuGGGCAGGauGUAGuCGCGgCAGg -3'
miRNA:   3'- aCAuCUCGUCCggCAUC-GCGCgGUCg -5'
14622 3' -58.4 NC_003521.1 + 142897 0.66 0.884957
Target:  5'- uUGgAGAGCGGcGCCaucagccGGCGaCGUCGGCg -3'
miRNA:   3'- -ACaUCUCGUC-CGGca-----UCGC-GCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 54309 0.66 0.884957
Target:  5'- cGUAGAGCAGcgcGUCGUgcuccgucaccaGGCGCacgguGCaCGGCa -3'
miRNA:   3'- aCAUCUCGUC---CGGCA------------UCGCG-----CG-GUCG- -5'
14622 3' -58.4 NC_003521.1 + 239769 0.66 0.864026
Target:  5'- -cUGGcGCAGGUCgGUGGCcccgaCGCCGGCc -3'
miRNA:   3'- acAUCuCGUCCGG-CAUCGc----GCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 197181 0.66 0.871204
Target:  5'- --cAGGGCuggAGGCgGUGGCGgucCCAGCg -3'
miRNA:   3'- acaUCUCG---UCCGgCAUCGCgc-GGUCG- -5'
14622 3' -58.4 NC_003521.1 + 150929 0.66 0.871204
Target:  5'- cGgcGuGUGGGCCG-AGCGCgGUCAGa -3'
miRNA:   3'- aCauCuCGUCCGGCaUCGCG-CGGUCg -5'
14622 3' -58.4 NC_003521.1 + 68134 0.66 0.866921
Target:  5'- cGUAcGAGCAGuGCUGguaucaGGCGCaggugcugcgucugcGCCAGUa -3'
miRNA:   3'- aCAU-CUCGUC-CGGCa-----UCGCG---------------CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 127780 0.66 0.864026
Target:  5'- aGUcGGGCGgcGGCCGUAGC-CGCacguGCu -3'
miRNA:   3'- aCAuCUCGU--CCGGCAUCGcGCGgu--CG- -5'
14622 3' -58.4 NC_003521.1 + 112841 0.66 0.878183
Target:  5'- gUGgcGGGCGucauGGCCG-AGCuGCcCCAGCu -3'
miRNA:   3'- -ACauCUCGU----CCGGCaUCG-CGcGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 33264 0.66 0.871204
Target:  5'- ----cAGCAGGCCGgcGCGauCGUgCAGCa -3'
miRNA:   3'- acaucUCGUCCGGCauCGC--GCG-GUCG- -5'
14622 3' -58.4 NC_003521.1 + 123615 0.66 0.869071
Target:  5'- --aGGGGCAGccGCCGUAGCagcggcgugaugauGCG-CAGCg -3'
miRNA:   3'- acaUCUCGUC--CGGCAUCG--------------CGCgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.