miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 3' -58.4 NC_003521.1 + 216255 0.72 0.551435
Target:  5'- gGUGgacGAGgAGGCCGccgagUAGUaGCGCCAGCu -3'
miRNA:   3'- aCAU---CUCgUCCGGC-----AUCG-CGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 216954 0.74 0.45834
Target:  5'- gGUAGAGaUAGGCgaaguucuCGUAGagacacaGCGCCAGCa -3'
miRNA:   3'- aCAUCUC-GUCCG--------GCAUCg------CGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 34516 0.74 0.45834
Target:  5'- gGUAGcggccGCGGGCCG-AGaCGCGCgAGCg -3'
miRNA:   3'- aCAUCu----CGUCCGGCaUC-GCGCGgUCG- -5'
14622 3' -58.4 NC_003521.1 + 211381 0.74 0.467292
Target:  5'- cGU--AGUAGGCCGUcAG-GCGCCGGCu -3'
miRNA:   3'- aCAucUCGUCCGGCA-UCgCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 166844 0.73 0.485461
Target:  5'- gUGaGGAuacGCAGGCgGUGGCGCgGCgGGCg -3'
miRNA:   3'- -ACaUCU---CGUCCGgCAUCGCG-CGgUCG- -5'
14622 3' -58.4 NC_003521.1 + 213029 0.73 0.485461
Target:  5'- gGgcGAGCcGGCCG-AGCGgGCCGGa -3'
miRNA:   3'- aCauCUCGuCCGGCaUCGCgCGGUCg -5'
14622 3' -58.4 NC_003521.1 + 102767 0.73 0.494671
Target:  5'- gGUAGAGCGgcagcGGCUGcgcgauGaCGCGCCGGCg -3'
miRNA:   3'- aCAUCUCGU-----CCGGCau----C-GCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 128473 0.72 0.551435
Target:  5'- cGUccauGGGCagcggcgugAGGCUGU-GCGCGCCGGCc -3'
miRNA:   3'- aCAu---CUCG---------UCCGGCAuCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 166096 0.72 0.551435
Target:  5'- --gGGAGCGGGCCGgcagguucacGCGgGCCuGCu -3'
miRNA:   3'- acaUCUCGUCCGGCau--------CGCgCGGuCG- -5'
14622 3' -58.4 NC_003521.1 + 223398 0.74 0.440716
Target:  5'- ---cGAcGCGGGCCGUguGGCGCcCCGGCg -3'
miRNA:   3'- acauCU-CGUCCGGCA--UCGCGcGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 167903 0.75 0.423484
Target:  5'- uUGUAGAGC-GGCagGUGGgGCGCC-GCg -3'
miRNA:   3'- -ACAUCUCGuCCGg-CAUCgCGCGGuCG- -5'
14622 3' -58.4 NC_003521.1 + 84899 0.76 0.38223
Target:  5'- ---cGAGUAGGCCGUcAGCGCccgguCCAGCa -3'
miRNA:   3'- acauCUCGUCCGGCA-UCGCGc----GGUCG- -5'
14622 3' -58.4 NC_003521.1 + 135001 0.82 0.159565
Target:  5'- --aGGGGCAGGCCGUGGCGuCGCCcuucucggugaAGCu -3'
miRNA:   3'- acaUCUCGUCCGGCAUCGC-GCGG-----------UCG- -5'
14622 3' -58.4 NC_003521.1 + 226429 0.82 0.159565
Target:  5'- ---cGAGCGcgacacGCCGUAGCGCGCCAGCu -3'
miRNA:   3'- acauCUCGUc-----CGGCAUCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 166253 0.77 0.335656
Target:  5'- cGgcGAGCGGGCCGUgcucacgGGCacGCGCaCGGCg -3'
miRNA:   3'- aCauCUCGUCCGGCA-------UCG--CGCG-GUCG- -5'
14622 3' -58.4 NC_003521.1 + 150556 0.76 0.351211
Target:  5'- gGUGGuGCGGGUgGUGGCGgCGgCGGCg -3'
miRNA:   3'- aCAUCuCGUCCGgCAUCGC-GCgGUCG- -5'
14622 3' -58.4 NC_003521.1 + 36810 0.76 0.351211
Target:  5'- ---cGGGCAGGCCGUGaucacGCGCcacggGCCGGCg -3'
miRNA:   3'- acauCUCGUCCGGCAU-----CGCG-----CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 58778 0.76 0.358795
Target:  5'- -----uGCAGGgCGgcGCGCGCCGGCg -3'
miRNA:   3'- acaucuCGUCCgGCauCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 116881 0.76 0.366494
Target:  5'- aGUGGcGC-GGCUGcggcGGCGCGCCGGCg -3'
miRNA:   3'- aCAUCuCGuCCGGCa---UCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 128914 0.76 0.374306
Target:  5'- -cUGGAuGCgguugaGGGCC-UGGCGCGCCAGCg -3'
miRNA:   3'- acAUCU-CG------UCCGGcAUCGCGCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.