miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 3' -58.4 NC_003521.1 + 53388 0.84 0.111717
Target:  5'- --aGGAGCAGGCCGcggcgagcaggggaUGGCGCGUCGGCa -3'
miRNA:   3'- acaUCUCGUCCGGC--------------AUCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 94820 0.72 0.561103
Target:  5'- gGUGGcGCGGauugacaaaaGCCGgcagcgggaAGCGCGCCAGCu -3'
miRNA:   3'- aCAUCuCGUC----------CGGCa--------UCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 90606 0.72 0.590362
Target:  5'- aUGUAGcccAGCAGGCUGUGGaCcUGCCAGa -3'
miRNA:   3'- -ACAUC---UCGUCCGGCAUC-GcGCGGUCg -5'
14622 3' -58.4 NC_003521.1 + 96855 0.66 0.900362
Target:  5'- -aUGGGGCggaAGGCCGggugguagcacucGCGCaGCCGGUg -3'
miRNA:   3'- acAUCUCG---UCCGGCau-----------CGCG-CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 103257 0.78 0.294682
Target:  5'- cGUAGGuCAGGCCGcaGGUGCGCCAGa -3'
miRNA:   3'- aCAUCUcGUCCGGCa-UCGCGCGGUCg -5'
14622 3' -58.4 NC_003521.1 + 173730 0.77 0.322021
Target:  5'- aGUAGGGCuugAGGUCGUAGCGCgugaucugggGCCAGa -3'
miRNA:   3'- aCAUCUCG---UCCGGCAUCGCG----------CGGUCg -5'
14622 3' -58.4 NC_003521.1 + 155569 0.75 0.390265
Target:  5'- --cGGAGCGGGUagccaGUuauuuGCGCGCCGGCc -3'
miRNA:   3'- acaUCUCGUCCGg----CAu----CGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 95060 0.75 0.406661
Target:  5'- gGUAGAGCAGGUCGcucaggUAGuCGCGCaggGGCu -3'
miRNA:   3'- aCAUCUCGUCCGGC------AUC-GCGCGg--UCG- -5'
14622 3' -58.4 NC_003521.1 + 95424 0.74 0.446841
Target:  5'- gGUGGGGUcgaugagcaggcccAGGCCGUcGCGCaCCGGCu -3'
miRNA:   3'- aCAUCUCG--------------UCCGGCAuCGCGcGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 236461 0.73 0.522756
Target:  5'- --gGGAcGCGGGCCGcgaugAGCGaacCGCCGGCg -3'
miRNA:   3'- acaUCU-CGUCCGGCa----UCGC---GCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 223678 0.74 0.44948
Target:  5'- --cAGGGaGGGUCGggcgaAGCGCGCCGGCa -3'
miRNA:   3'- acaUCUCgUCCGGCa----UCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 200330 0.75 0.41502
Target:  5'- --gAGAugcgcuGCGGcGCCGUGGCGCGCC-GCg -3'
miRNA:   3'- acaUCU------CGUC-CGGCAUCGCGCGGuCG- -5'
14622 3' -58.4 NC_003521.1 + 129092 0.81 0.193809
Target:  5'- cGUAcuGCAGGCUGUggguGGCGUGCCGGCg -3'
miRNA:   3'- aCAUcuCGUCCGGCA----UCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 138775 0.73 0.513322
Target:  5'- cGUAGuGCucaacccGGCCGUGcuGCGCGCCguGGCc -3'
miRNA:   3'- aCAUCuCGu------CCGGCAU--CGCGCGG--UCG- -5'
14622 3' -58.4 NC_003521.1 + 177732 0.79 0.257119
Target:  5'- cUGgAGGGCGGGC---AGCGCGCCGGCg -3'
miRNA:   3'- -ACaUCUCGUCCGgcaUCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 102345 0.75 0.406661
Target:  5'- gGUAGAcgggcgGCAGGUggcagaUGUGGCGcCGCCGGCg -3'
miRNA:   3'- aCAUCU------CGUCCG------GCAUCGC-GCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 120066 0.73 0.522756
Target:  5'- aGU--GGCAGGCCGgcauccaGGCGCGCCAc- -3'
miRNA:   3'- aCAucUCGUCCGGCa------UCGCGCGGUcg -5'
14622 3' -58.4 NC_003521.1 + 197841 0.72 0.590362
Target:  5'- cGUcu-GCAGGUCGUcgguGgGCGCCGGCg -3'
miRNA:   3'- aCAucuCGUCCGGCAu---CgCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 184358 0.78 0.281706
Target:  5'- ---cGGGCGGGCCGUGGCGCGgC-GCc -3'
miRNA:   3'- acauCUCGUCCGGCAUCGCGCgGuCG- -5'
14622 3' -58.4 NC_003521.1 + 152290 0.76 0.38223
Target:  5'- ---cGAGgAGGCCGUuucGGUGCGCCuGCa -3'
miRNA:   3'- acauCUCgUCCGGCA---UCGCGCGGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.