miRNA display CGI


Results 1 - 20 of 307 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 3' -58.4 NC_003521.1 + 224853 1.11 0.001868
Target:  5'- gUGUAGAGCAGGCCGUAGCGCGCCAGCu -3'
miRNA:   3'- -ACAUCUCGUCCGGCAUCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 53388 0.84 0.111717
Target:  5'- --aGGAGCAGGCCGcggcgagcaggggaUGGCGCGUCGGCa -3'
miRNA:   3'- acaUCUCGUCCGGC--------------AUCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 135001 0.82 0.159565
Target:  5'- --aGGGGCAGGCCGUGGCGuCGCCcuucucggugaAGCu -3'
miRNA:   3'- acaUCUCGUCCGGCAUCGC-GCGG-----------UCG- -5'
14622 3' -58.4 NC_003521.1 + 226429 0.82 0.159565
Target:  5'- ---cGAGCGcgacacGCCGUAGCGCGCCAGCu -3'
miRNA:   3'- acauCUCGUc-----CGGCAUCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 129092 0.81 0.193809
Target:  5'- cGUAcuGCAGGCUGUggguGGCGUGCCGGCg -3'
miRNA:   3'- aCAUcuCGUCCGGCA----UCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 177732 0.79 0.257119
Target:  5'- cUGgAGGGCGGGC---AGCGCGCCGGCg -3'
miRNA:   3'- -ACaUCUCGUCCGgcaUCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 184358 0.78 0.281706
Target:  5'- ---cGGGCGGGCCGUGGCGCGgC-GCc -3'
miRNA:   3'- acauCUCGUCCGGCAUCGCGCgGuCG- -5'
14622 3' -58.4 NC_003521.1 + 103257 0.78 0.294682
Target:  5'- cGUAGGuCAGGCCGcaGGUGCGCCAGa -3'
miRNA:   3'- aCAUCUcGUCCGGCa-UCGCGCGGUCg -5'
14622 3' -58.4 NC_003521.1 + 173730 0.77 0.322021
Target:  5'- aGUAGGGCuugAGGUCGUAGCGCgugaucugggGCCAGa -3'
miRNA:   3'- aCAUCUCG---UCCGGCAUCGCG----------CGGUCg -5'
14622 3' -58.4 NC_003521.1 + 166253 0.77 0.335656
Target:  5'- cGgcGAGCGGGCCGUgcucacgGGCacGCGCaCGGCg -3'
miRNA:   3'- aCauCUCGUCCGGCA-------UCG--CGCG-GUCG- -5'
14622 3' -58.4 NC_003521.1 + 150556 0.76 0.351211
Target:  5'- gGUGGuGCGGGUgGUGGCGgCGgCGGCg -3'
miRNA:   3'- aCAUCuCGUCCGgCAUCGC-GCgGUCG- -5'
14622 3' -58.4 NC_003521.1 + 36810 0.76 0.351211
Target:  5'- ---cGGGCAGGCCGUGaucacGCGCcacggGCCGGCg -3'
miRNA:   3'- acauCUCGUCCGGCAU-----CGCG-----CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 58778 0.76 0.358795
Target:  5'- -----uGCAGGgCGgcGCGCGCCGGCg -3'
miRNA:   3'- acaucuCGUCCgGCauCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 116881 0.76 0.366494
Target:  5'- aGUGGcGC-GGCUGcggcGGCGCGCCGGCg -3'
miRNA:   3'- aCAUCuCGuCCGGCa---UCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 128914 0.76 0.374306
Target:  5'- -cUGGAuGCgguugaGGGCC-UGGCGCGCCAGCg -3'
miRNA:   3'- acAUCU-CG------UCCGGcAUCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 84899 0.76 0.38223
Target:  5'- ---cGAGUAGGCCGUcAGCGCccgguCCAGCa -3'
miRNA:   3'- acauCUCGUCCGGCA-UCGCGc----GGUCG- -5'
14622 3' -58.4 NC_003521.1 + 152290 0.76 0.38223
Target:  5'- ---cGAGgAGGCCGUuucGGUGCGCCuGCa -3'
miRNA:   3'- acauCUCgUCCGGCA---UCGCGCGGuCG- -5'
14622 3' -58.4 NC_003521.1 + 155569 0.75 0.390265
Target:  5'- --cGGAGCGGGUagccaGUuauuuGCGCGCCGGCc -3'
miRNA:   3'- acaUCUCGUCCGg----CAu----CGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 95060 0.75 0.406661
Target:  5'- gGUAGAGCAGGUCGcucaggUAGuCGCGCaggGGCu -3'
miRNA:   3'- aCAUCUCGUCCGGC------AUC-GCGCGg--UCG- -5'
14622 3' -58.4 NC_003521.1 + 102345 0.75 0.406661
Target:  5'- gGUAGAcgggcgGCAGGUggcagaUGUGGCGcCGCCGGCg -3'
miRNA:   3'- aCAUCU------CGUCCG------GCAUCGC-GCGGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.