miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 3' -58.4 NC_003521.1 + 79 0.68 0.800116
Target:  5'- cGUGcGGCGGGCCGgccGGUcggacguguuucGgGCCGGCg -3'
miRNA:   3'- aCAUcUCGUCCGGCa--UCG------------CgCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 997 0.66 0.864026
Target:  5'- cGUGG-GCcGGCCGUAcggcuucuacGCGCGCaucacgccgcgCAGCc -3'
miRNA:   3'- aCAUCuCGuCCGGCAU----------CGCGCG-----------GUCG- -5'
14622 3' -58.4 NC_003521.1 + 4124 0.71 0.619874
Target:  5'- -aUAGGGUGGGauaCGggAGCGgGCCGGCg -3'
miRNA:   3'- acAUCUCGUCCg--GCa-UCGCgCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 6725 0.69 0.755363
Target:  5'- cGUGGuGCAgGGCC-UGaCGCaGCCAGCg -3'
miRNA:   3'- aCAUCuCGU-CCGGcAUcGCG-CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 8008 0.71 0.629738
Target:  5'- --cGGGGCAGcGCCGUAGCuccagacCGCCGGa -3'
miRNA:   3'- acaUCUCGUC-CGGCAUCGc------GCGGUCg -5'
14622 3' -58.4 NC_003521.1 + 13912 0.7 0.688699
Target:  5'- --cGGAGgGGGCCGcggaGGcCGCGCUGGCc -3'
miRNA:   3'- acaUCUCgUCCGGCa---UC-GCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 13968 0.67 0.833429
Target:  5'- -cUGGAGCccugauGGGCCugcccGGCGCGgCGGCg -3'
miRNA:   3'- acAUCUCG------UCCGGca---UCGCGCgGUCG- -5'
14622 3' -58.4 NC_003521.1 + 14437 0.67 0.849093
Target:  5'- cGUGGuGCAcacGGCCcugcGGCgGCGUCAGCc -3'
miRNA:   3'- aCAUCuCGU---CCGGca--UCG-CGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 14738 0.69 0.75905
Target:  5'- cUGUuGGGCGugacgggccggccgcGGCCGgGGCGCGCCuucguGGCc -3'
miRNA:   3'- -ACAuCUCGU---------------CCGGCaUCGCGCGG-----UCG- -5'
14622 3' -58.4 NC_003521.1 + 15219 0.7 0.698418
Target:  5'- cGUGGGGCugcaggcGGCCG-AGCGCgaggccGCCgAGCg -3'
miRNA:   3'- aCAUCUCGu------CCGGCaUCGCG------CGG-UCG- -5'
14622 3' -58.4 NC_003521.1 + 15324 0.66 0.871204
Target:  5'- ---cGAGCGGGUgaucAGCGCGCUGGUg -3'
miRNA:   3'- acauCUCGUCCGgca-UCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 17217 0.66 0.882947
Target:  5'- --aAGAGCGucGCCGUcGCGCgguauggcaagcgaGCCGGCg -3'
miRNA:   3'- acaUCUCGUc-CGGCAuCGCG--------------CGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 17789 0.67 0.841349
Target:  5'- -----uGgAGGCCGUcGGCGUGCUGGCc -3'
miRNA:   3'- acaucuCgUCCGGCA-UCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 18774 0.7 0.698418
Target:  5'- --gAGAccacGCAGGCgGUGGaGgGCCAGCg -3'
miRNA:   3'- acaUCU----CGUCCGgCAUCgCgCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 18920 0.7 0.708086
Target:  5'- --aAGGGUGGcGCC---GCGCGCCGGCa -3'
miRNA:   3'- acaUCUCGUC-CGGcauCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 18975 0.69 0.727234
Target:  5'- --aGGAGgGGGUCGaGGaCGCGCCGcGCg -3'
miRNA:   3'- acaUCUCgUCCGGCaUC-GCGCGGU-CG- -5'
14622 3' -58.4 NC_003521.1 + 21772 0.66 0.864026
Target:  5'- ---uGGGC--GCCGUGGCGUGCCuGUc -3'
miRNA:   3'- acauCUCGucCGGCAUCGCGCGGuCG- -5'
14622 3' -58.4 NC_003521.1 + 22170 0.71 0.649463
Target:  5'- gGUGGAGaGGGaCGaGGCGcCGCCGGCc -3'
miRNA:   3'- aCAUCUCgUCCgGCaUCGC-GCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 26104 0.66 0.897254
Target:  5'- --cGGAGUcGGCCagGUagaguucGGCGgGCCGGCu -3'
miRNA:   3'- acaUCUCGuCCGG--CA-------UCGCgCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 27083 0.68 0.781693
Target:  5'- gGUAGcGCAGGCaGUgcaggcucucgacGGCGCGCaGGCc -3'
miRNA:   3'- aCAUCuCGUCCGgCA-------------UCGCGCGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.