miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 3' -58.4 NC_003521.1 + 240628 0.68 0.800116
Target:  5'- cGUGcGGCGGGCCGgccGGUcggacguguuucGgGCCGGCg -3'
miRNA:   3'- aCAUcUCGUCCGGCa--UCG------------CgCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 239769 0.66 0.864026
Target:  5'- -cUGGcGCAGGUCgGUGGCcccgaCGCCGGCc -3'
miRNA:   3'- acAUCuCGUCCGG-CAUCGc----GCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 239664 0.68 0.808675
Target:  5'- cGUAG-GCGGcGCCGUGGCucccggggaCGgCAGCg -3'
miRNA:   3'- aCAUCuCGUC-CGGCAUCGc--------GCgGUCG- -5'
14622 3' -58.4 NC_003521.1 + 239237 0.68 0.773625
Target:  5'- aUGUGGcgcuGCAcGGCCGUcAGCaGCGaCGGCg -3'
miRNA:   3'- -ACAUCu---CGU-CCGGCA-UCG-CGCgGUCG- -5'
14622 3' -58.4 NC_003521.1 + 238811 0.69 0.729133
Target:  5'- uUGUGGGGCGcgacgccGugucccuggguguucGCCGUaugcguuauuagaGGCGCGCCGGCu -3'
miRNA:   3'- -ACAUCUCGU-------C---------------CGGCA-------------UCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 238551 0.7 0.708086
Target:  5'- gGUAGAGguGGCCGUccugggggcaguAGC-CGaagaCGGCa -3'
miRNA:   3'- aCAUCUCguCCGGCA------------UCGcGCg---GUCG- -5'
14622 3' -58.4 NC_003521.1 + 236461 0.73 0.522756
Target:  5'- --gGGAcGCGGGCCGcgaugAGCGaacCGCCGGCg -3'
miRNA:   3'- acaUCU-CGUCCGGCa----UCGC---GCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 233142 0.69 0.755363
Target:  5'- uUGgGGGGCGGGuUCGU-GCcCGCCGGCu -3'
miRNA:   3'- -ACaUCUCGUCC-GGCAuCGcGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 229235 0.67 0.849093
Target:  5'- aGUGGAcccGCGGGCCGcGGagGUGCUuGCg -3'
miRNA:   3'- aCAUCU---CGUCCGGCaUCg-CGCGGuCG- -5'
14622 3' -58.4 NC_003521.1 + 226856 0.71 0.639603
Target:  5'- ---cGGGCAGGCCcaucAGgGCGuCCAGCg -3'
miRNA:   3'- acauCUCGUCCGGca--UCgCGC-GGUCG- -5'
14622 3' -58.4 NC_003521.1 + 226429 0.82 0.159565
Target:  5'- ---cGAGCGcgacacGCCGUAGCGCGCCAGCu -3'
miRNA:   3'- acauCUCGUc-----CGGCAUCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 225734 0.68 0.800116
Target:  5'- ----cAGUAGGCUGUuugauGCGCGCCgAGUa -3'
miRNA:   3'- acaucUCGUCCGGCAu----CGCGCGG-UCG- -5'
14622 3' -58.4 NC_003521.1 + 224853 1.11 0.001868
Target:  5'- gUGUAGAGCAGGCCGUAGCGCGCCAGCu -3'
miRNA:   3'- -ACAUCUCGUCCGGCAUCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 224728 0.68 0.808675
Target:  5'- cGUGGuGCucGCCGacgcaGGCG-GCCAGCg -3'
miRNA:   3'- aCAUCuCGucCGGCa----UCGCgCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 224085 0.69 0.755363
Target:  5'- ----cGGCGGGCgc--GCGCGCCGGCg -3'
miRNA:   3'- acaucUCGUCCGgcauCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 223725 0.66 0.861834
Target:  5'- gGUAcgacGGCGGGuCCgGUGGCGggaacgugggucgcCGCCAGCg -3'
miRNA:   3'- aCAUc---UCGUCC-GG-CAUCGC--------------GCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 223678 0.74 0.44948
Target:  5'- --cAGGGaGGGUCGggcgaAGCGCGCCGGCa -3'
miRNA:   3'- acaUCUCgUCCGGCa----UCGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 223460 0.7 0.65931
Target:  5'- ---cGAGUcuGGGCCGc--CGCGCCGGCg -3'
miRNA:   3'- acauCUCG--UCCGGCaucGCGCGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 223398 0.74 0.440716
Target:  5'- ---cGAcGCGGGCCGUguGGCGCcCCGGCg -3'
miRNA:   3'- acauCU-CGUCCGGCA--UCGCGcGGUCG- -5'
14622 3' -58.4 NC_003521.1 + 221893 0.71 0.629738
Target:  5'- gUGUGGGGCGGauuGCCGgcGCGCGgC-GCc -3'
miRNA:   3'- -ACAUCUCGUC---CGGCauCGCGCgGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.