Results 21 - 40 of 307 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 200330 | 0.75 | 0.41502 |
Target: 5'- --gAGAugcgcuGCGGcGCCGUGGCGCGCC-GCg -3' miRNA: 3'- acaUCU------CGUC-CGGCAUCGCGCGGuCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 167903 | 0.75 | 0.423484 |
Target: 5'- uUGUAGAGC-GGCagGUGGgGCGCC-GCg -3' miRNA: 3'- -ACAUCUCGuCCGg-CAUCgCGCGGuCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 223398 | 0.74 | 0.440716 |
Target: 5'- ---cGAcGCGGGCCGUguGGCGCcCCGGCg -3' miRNA: 3'- acauCU-CGUCCGGCA--UCGCGcGGUCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 95424 | 0.74 | 0.446841 |
Target: 5'- gGUGGGGUcgaugagcaggcccAGGCCGUcGCGCaCCGGCu -3' miRNA: 3'- aCAUCUCG--------------UCCGGCAuCGCGcGGUCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 181141 | 0.74 | 0.4486 |
Target: 5'- gGUAGGGCuccaccuGG-CGUcugagcuccuccaGGCGCGCCAGCg -3' miRNA: 3'- aCAUCUCGu------CCgGCA-------------UCGCGCGGUCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 223678 | 0.74 | 0.44948 |
Target: 5'- --cAGGGaGGGUCGggcgaAGCGCGCCGGCa -3' miRNA: 3'- acaUCUCgUCCGGCa----UCGCGCGGUCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 216954 | 0.74 | 0.45834 |
Target: 5'- gGUAGAGaUAGGCgaaguucuCGUAGagacacaGCGCCAGCa -3' miRNA: 3'- aCAUCUC-GUCCG--------GCAUCg------CGCGGUCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 34516 | 0.74 | 0.45834 |
Target: 5'- gGUAGcggccGCGGGCCG-AGaCGCGCgAGCg -3' miRNA: 3'- aCAUCu----CGUCCGGCaUC-GCGCGgUCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 211381 | 0.74 | 0.467292 |
Target: 5'- cGU--AGUAGGCCGUcAG-GCGCCGGCu -3' miRNA: 3'- aCAucUCGUCCGGCA-UCgCGCGGUCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 166844 | 0.73 | 0.485461 |
Target: 5'- gUGaGGAuacGCAGGCgGUGGCGCgGCgGGCg -3' miRNA: 3'- -ACaUCU---CGUCCGgCAUCGCG-CGgUCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 213029 | 0.73 | 0.485461 |
Target: 5'- gGgcGAGCcGGCCG-AGCGgGCCGGa -3' miRNA: 3'- aCauCUCGuCCGGCaUCGCgCGGUCg -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 102767 | 0.73 | 0.494671 |
Target: 5'- gGUAGAGCGgcagcGGCUGcgcgauGaCGCGCCGGCg -3' miRNA: 3'- aCAUCUCGU-----CCGGCau----C-GCGCGGUCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 138775 | 0.73 | 0.513322 |
Target: 5'- cGUAGuGCucaacccGGCCGUGcuGCGCGCCguGGCc -3' miRNA: 3'- aCAUCuCGu------CCGGCAU--CGCGCGG--UCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 236461 | 0.73 | 0.522756 |
Target: 5'- --gGGAcGCGGGCCGcgaugAGCGaacCGCCGGCg -3' miRNA: 3'- acaUCU-CGUCCGGCa----UCGC---GCGGUCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 120066 | 0.73 | 0.522756 |
Target: 5'- aGU--GGCAGGCCGgcauccaGGCGCGCCAc- -3' miRNA: 3'- aCAucUCGUCCGGCa------UCGCGCGGUcg -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 128473 | 0.72 | 0.551435 |
Target: 5'- cGUccauGGGCagcggcgugAGGCUGU-GCGCGCCGGCc -3' miRNA: 3'- aCAu---CUCG---------UCCGGCAuCGCGCGGUCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 166096 | 0.72 | 0.551435 |
Target: 5'- --gGGAGCGGGCCGgcagguucacGCGgGCCuGCu -3' miRNA: 3'- acaUCUCGUCCGGCau--------CGCgCGGuCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 216255 | 0.72 | 0.551435 |
Target: 5'- gGUGgacGAGgAGGCCGccgagUAGUaGCGCCAGCu -3' miRNA: 3'- aCAU---CUCgUCCGGC-----AUCG-CGCGGUCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 132442 | 0.72 | 0.561103 |
Target: 5'- gGUAGcgguGGUGGGCUGUucGGCGCGuCCGGUc -3' miRNA: 3'- aCAUC----UCGUCCGGCA--UCGCGC-GGUCG- -5' |
|||||||
14622 | 3' | -58.4 | NC_003521.1 | + | 94820 | 0.72 | 0.561103 |
Target: 5'- gGUGGcGCGGauugacaaaaGCCGgcagcgggaAGCGCGCCAGCu -3' miRNA: 3'- aCAUCuCGUC----------CGGCa--------UCGCGCGGUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home