Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14622 | 5' | -54 | NC_003521.1 | + | 59638 | 0.68 | 0.939378 |
Target: 5'- -gGCUcgcaGGCGUugGuGCGGCAGAcgCUg -3' miRNA: 3'- caCGAa---CCGCGugU-CGUCGUCUuaGA- -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 98210 | 0.68 | 0.939377 |
Target: 5'- uUGCUgucGGCGgGCAGCGGCgugGGAggCg -3' miRNA: 3'- cACGAa--CCGCgUGUCGUCG---UCUuaGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 40717 | 0.68 | 0.939377 |
Target: 5'- uGUGC-UGGCGCGCGGCugugacuGCAGc---- -3' miRNA: 3'- -CACGaACCGCGUGUCGu------CGUCuuaga -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 199599 | 0.68 | 0.939377 |
Target: 5'- aGUGC-UGGuUGCugAGCAcgaugaaggGCAGGAUCg -3' miRNA: 3'- -CACGaACC-GCGugUCGU---------CGUCUUAGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 197651 | 0.68 | 0.934492 |
Target: 5'- -cGCggUGGCGCucguGCGGCAGCAGc---- -3' miRNA: 3'- caCGa-ACCGCG----UGUCGUCGUCuuaga -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 71857 | 0.68 | 0.934492 |
Target: 5'- -cGCgucGGCG-ACAGCAGCGGGAg-- -3' miRNA: 3'- caCGaa-CCGCgUGUCGUCGUCUUaga -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 71568 | 0.68 | 0.934492 |
Target: 5'- -cGCcuuuUUGGCGUACAguucgcGCAGCAGGuUCUc -3' miRNA: 3'- caCG----AACCGCGUGU------CGUCGUCUuAGA- -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 14432 | 0.68 | 0.93399 |
Target: 5'- cGUGacgUGGUGCACAcggcccuGCGGCGGcGUCa -3' miRNA: 3'- -CACga-ACCGCGUGU-------CGUCGUCuUAGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 124667 | 0.68 | 0.929364 |
Target: 5'- cGUGaaggUGGCGuCGCGGUAGguGAugGUCUu -3' miRNA: 3'- -CACga--ACCGC-GUGUCGUCguCU--UAGA- -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 67812 | 0.68 | 0.928309 |
Target: 5'- cGUGCUccaaagcauccGCGUGCAGCGGCAGGAa-- -3' miRNA: 3'- -CACGAac---------CGCGUGUCGUCGUCUUaga -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 46636 | 0.68 | 0.923993 |
Target: 5'- -gGCgguagacGGCGU-CGGCGGCGGGAUCg -3' miRNA: 3'- caCGaa-----CCGCGuGUCGUCGUCUUAGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 53414 | 0.68 | 0.923993 |
Target: 5'- -gGCgucgGGCGcCACcgAGCAGCGGAagGUCUc -3' miRNA: 3'- caCGaa--CCGC-GUG--UCGUCGUCU--UAGA- -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 113141 | 0.68 | 0.923992 |
Target: 5'- cGUGCU-GGUGCACGGCAacaCGGAcgCc -3' miRNA: 3'- -CACGAaCCGCGUGUCGUc--GUCUuaGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 104151 | 0.68 | 0.923992 |
Target: 5'- cUGCUcGGUGCucugcgGCGGCGGCGcGggUCg -3' miRNA: 3'- cACGAaCCGCG------UGUCGUCGU-CuuAGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 49202 | 0.68 | 0.923992 |
Target: 5'- -cGCUUcgccGCGCACAGCaaacAGCAGAAgUCa -3' miRNA: 3'- caCGAAc---CGCGUGUCG----UCGUCUU-AGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 61279 | 0.68 | 0.918379 |
Target: 5'- cUGCUUGGCGCugAGCcGCGc----- -3' miRNA: 3'- cACGAACCGCGugUCGuCGUcuuaga -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 33951 | 0.69 | 0.912522 |
Target: 5'- cGUGCgcGGCGaGCAGCuggAGCGGAGUUc -3' miRNA: 3'- -CACGaaCCGCgUGUCG---UCGUCUUAGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 178377 | 0.69 | 0.912522 |
Target: 5'- cUGCUUGGCGUAggcgUAGC-GCAGGaaGUCg -3' miRNA: 3'- cACGAACCGCGU----GUCGuCGUCU--UAGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 135747 | 0.69 | 0.912522 |
Target: 5'- cUGCggUGGUG-GCGGCGGUGGGAUCg -3' miRNA: 3'- cACGa-ACCGCgUGUCGUCGUCUUAGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 181450 | 0.69 | 0.912522 |
Target: 5'- aGUGCUgcgcGGCGUcCAGCGGCuGGcgCg -3' miRNA: 3'- -CACGAa---CCGCGuGUCGUCGuCUuaGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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