miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 5' -54 NC_003521.1 + 74891 0.66 0.966993
Target:  5'- -cGCUgcuGCGCgagacggugGCGGCGGUGGAGUCg -3'
miRNA:   3'- caCGAac-CGCG---------UGUCGUCGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 192222 0.66 0.966993
Target:  5'- cGUGCUgacGGUGCACGGagugaCAGCGGGuugCa -3'
miRNA:   3'- -CACGAa--CCGCGUGUC-----GUCGUCUua-Ga -5'
14622 5' -54 NC_003521.1 + 183456 0.67 0.963728
Target:  5'- -cGCccUGGCGCgucACGGCGGCGG--UCUg -3'
miRNA:   3'- caCGa-ACCGCG---UGUCGUCGUCuuAGA- -5'
14622 5' -54 NC_003521.1 + 197879 0.67 0.963728
Target:  5'- -cGCUgGGCuGCagGCGGCAGCGGAuguugcucGUCa -3'
miRNA:   3'- caCGAaCCG-CG--UGUCGUCGUCU--------UAGa -5'
14622 5' -54 NC_003521.1 + 126084 0.67 0.960244
Target:  5'- -aGCaguagUGGgGCACguagAGCAGCAGAcagGUCa -3'
miRNA:   3'- caCGa----ACCgCGUG----UCGUCGUCU---UAGa -5'
14622 5' -54 NC_003521.1 + 47659 0.67 0.956536
Target:  5'- -aGCU--GCGCaacaGCAGCAGCAGAcgCc -3'
miRNA:   3'- caCGAacCGCG----UGUCGUCGUCUuaGa -5'
14622 5' -54 NC_003521.1 + 84753 0.67 0.956536
Target:  5'- uUGCUcgGGCGCgGCGGCGGCGacGUUg -3'
miRNA:   3'- cACGAa-CCGCG-UGUCGUCGUcuUAGa -5'
14622 5' -54 NC_003521.1 + 139452 0.67 0.956536
Target:  5'- -cGCgaaGGUGUAgCGGCAGCGGAAcUCg -3'
miRNA:   3'- caCGaa-CCGCGU-GUCGUCGUCUU-AGa -5'
14622 5' -54 NC_003521.1 + 96529 0.67 0.956536
Target:  5'- -cGCagcGCGUGCGGCAGCAgcGAGUCg -3'
miRNA:   3'- caCGaacCGCGUGUCGUCGU--CUUAGa -5'
14622 5' -54 NC_003521.1 + 49894 0.67 0.956536
Target:  5'- cGUGCgugUGGCG-ACGGCAGCc--AUCUu -3'
miRNA:   3'- -CACGa--ACCGCgUGUCGUCGucuUAGA- -5'
14622 5' -54 NC_003521.1 + 123903 0.67 0.954202
Target:  5'- cGUGCUgucggcgcgcGGCGCuguucuccaccaguuGCAGCggcgccgauAGCAGGAUCUg -3'
miRNA:   3'- -CACGAa---------CCGCG---------------UGUCG---------UCGUCUUAGA- -5'
14622 5' -54 NC_003521.1 + 92014 0.67 0.952599
Target:  5'- -gGCgaGGCGCggcgGCGGCGGCGGuggGUCc -3'
miRNA:   3'- caCGaaCCGCG----UGUCGUCGUCu--UAGa -5'
14622 5' -54 NC_003521.1 + 119114 0.67 0.952599
Target:  5'- cGUGuCUaaccuaucgUGG-GCGCGGCAGCAGAAc-- -3'
miRNA:   3'- -CAC-GA---------ACCgCGUGUCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 153109 0.67 0.948429
Target:  5'- -cGCcgGGCGCGCgcgacGGCAGCAGGc--- -3'
miRNA:   3'- caCGaaCCGCGUG-----UCGUCGUCUuaga -5'
14622 5' -54 NC_003521.1 + 98831 0.67 0.948429
Target:  5'- cUGCUUGGCGCgggccagcucccGCuGCAGCuccuGAcgCUc -3'
miRNA:   3'- cACGAACCGCG------------UGuCGUCGu---CUuaGA- -5'
14622 5' -54 NC_003521.1 + 152902 0.67 0.948429
Target:  5'- aUGCccGGCGCgGCGGCcAGCcaGGAGUCg -3'
miRNA:   3'- cACGaaCCGCG-UGUCG-UCG--UCUUAGa -5'
14622 5' -54 NC_003521.1 + 223183 0.67 0.947999
Target:  5'- gGUGC-UGGCGUACGuagcuccGCAGCgcgucGGggUCg -3'
miRNA:   3'- -CACGaACCGCGUGU-------CGUCG-----UCuuAGa -5'
14622 5' -54 NC_003521.1 + 123161 0.67 0.944023
Target:  5'- gGUGCUgcugcugaggUGGCG-GCGGCGGCGGGGg-- -3'
miRNA:   3'- -CACGA----------ACCGCgUGUCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 59638 0.68 0.939378
Target:  5'- -gGCUcgcaGGCGUugGuGCGGCAGAcgCUg -3'
miRNA:   3'- caCGAa---CCGCGugU-CGUCGUCUuaGA- -5'
14622 5' -54 NC_003521.1 + 395 0.68 0.939378
Target:  5'- uGUGC-UGGCGCGCGGCugugacuGCAGc---- -3'
miRNA:   3'- -CACGaACCGCGUGUCGu------CGUCuuaga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.