miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 5' -54 NC_003521.1 + 33951 0.69 0.912522
Target:  5'- cGUGCgcGGCGaGCAGCuggAGCGGAGUUc -3'
miRNA:   3'- -CACGaaCCGCgUGUCG---UCGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 61279 0.68 0.918379
Target:  5'- cUGCUUGGCGCugAGCcGCGc----- -3'
miRNA:   3'- cACGAACCGCGugUCGuCGUcuuaga -5'
14622 5' -54 NC_003521.1 + 104151 0.68 0.923992
Target:  5'- cUGCUcGGUGCucugcgGCGGCGGCGcGggUCg -3'
miRNA:   3'- cACGAaCCGCG------UGUCGUCGU-CuuAGa -5'
14622 5' -54 NC_003521.1 + 49202 0.68 0.923992
Target:  5'- -cGCUUcgccGCGCACAGCaaacAGCAGAAgUCa -3'
miRNA:   3'- caCGAAc---CGCGUGUCG----UCGUCUU-AGa -5'
14622 5' -54 NC_003521.1 + 113141 0.68 0.923992
Target:  5'- cGUGCU-GGUGCACGGCAacaCGGAcgCc -3'
miRNA:   3'- -CACGAaCCGCGUGUCGUc--GUCUuaGa -5'
14622 5' -54 NC_003521.1 + 46636 0.68 0.923993
Target:  5'- -gGCgguagacGGCGU-CGGCGGCGGGAUCg -3'
miRNA:   3'- caCGaa-----CCGCGuGUCGUCGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 53414 0.68 0.923993
Target:  5'- -gGCgucgGGCGcCACcgAGCAGCGGAagGUCUc -3'
miRNA:   3'- caCGaa--CCGC-GUG--UCGUCGUCU--UAGA- -5'
14622 5' -54 NC_003521.1 + 67812 0.68 0.928309
Target:  5'- cGUGCUccaaagcauccGCGUGCAGCGGCAGGAa-- -3'
miRNA:   3'- -CACGAac---------CGCGUGUCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 124667 0.68 0.929364
Target:  5'- cGUGaaggUGGCGuCGCGGUAGguGAugGUCUu -3'
miRNA:   3'- -CACga--ACCGC-GUGUCGUCguCU--UAGA- -5'
14622 5' -54 NC_003521.1 + 14432 0.68 0.93399
Target:  5'- cGUGacgUGGUGCACAcggcccuGCGGCGGcGUCa -3'
miRNA:   3'- -CACga-ACCGCGUGU-------CGUCGUCuUAGa -5'
14622 5' -54 NC_003521.1 + 71568 0.68 0.934492
Target:  5'- -cGCcuuuUUGGCGUACAguucgcGCAGCAGGuUCUc -3'
miRNA:   3'- caCG----AACCGCGUGU------CGUCGUCUuAGA- -5'
14622 5' -54 NC_003521.1 + 71857 0.68 0.934492
Target:  5'- -cGCgucGGCG-ACAGCAGCGGGAg-- -3'
miRNA:   3'- caCGaa-CCGCgUGUCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 197651 0.68 0.934492
Target:  5'- -cGCggUGGCGCucguGCGGCAGCAGc---- -3'
miRNA:   3'- caCGa-ACCGCG----UGUCGUCGUCuuaga -5'
14622 5' -54 NC_003521.1 + 199599 0.68 0.939377
Target:  5'- aGUGC-UGGuUGCugAGCAcgaugaaggGCAGGAUCg -3'
miRNA:   3'- -CACGaACC-GCGugUCGU---------CGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 98210 0.68 0.939377
Target:  5'- uUGCUgucGGCGgGCAGCGGCgugGGAggCg -3'
miRNA:   3'- cACGAa--CCGCgUGUCGUCG---UCUuaGa -5'
14622 5' -54 NC_003521.1 + 40717 0.68 0.939377
Target:  5'- uGUGC-UGGCGCGCGGCugugacuGCAGc---- -3'
miRNA:   3'- -CACGaACCGCGUGUCGu------CGUCuuaga -5'
14622 5' -54 NC_003521.1 + 395 0.68 0.939378
Target:  5'- uGUGC-UGGCGCGCGGCugugacuGCAGc---- -3'
miRNA:   3'- -CACGaACCGCGUGUCGu------CGUCuuaga -5'
14622 5' -54 NC_003521.1 + 59638 0.68 0.939378
Target:  5'- -gGCUcgcaGGCGUugGuGCGGCAGAcgCUg -3'
miRNA:   3'- caCGAa---CCGCGugU-CGUCGUCUuaGA- -5'
14622 5' -54 NC_003521.1 + 32141 0.68 0.939378
Target:  5'- -gGCgcGGUGCACcaAGCGGCGGAAg-- -3'
miRNA:   3'- caCGaaCCGCGUG--UCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 123161 0.67 0.944023
Target:  5'- gGUGCUgcugcugaggUGGCG-GCGGCGGCGGGGg-- -3'
miRNA:   3'- -CACGA----------ACCGCgUGUCGUCGUCUUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.