miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 5' -54 NC_003521.1 + 224887 1.07 0.007314
Target:  5'- gGUGCUUGGCGCACAGCAGCAGAAUCUc -3'
miRNA:   3'- -CACGAACCGCGUGUCGUCGUCUUAGA- -5'
14622 5' -54 NC_003521.1 + 70225 0.78 0.44084
Target:  5'- -cGCUUGGCGCGCAGCagggcuaGGCAGGGc-- -3'
miRNA:   3'- caCGAACCGCGUGUCG-------UCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 124950 0.77 0.508055
Target:  5'- cGUGggUGG-GCACGuGCAGCAGGAUCUg -3'
miRNA:   3'- -CACgaACCgCGUGU-CGUCGUCUUAGA- -5'
14622 5' -54 NC_003521.1 + 199644 0.72 0.760702
Target:  5'- uUGCagcaGGCagaGCAGCAGCAGAGUCg -3'
miRNA:   3'- cACGaa--CCGcg-UGUCGUCGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 197262 0.72 0.770239
Target:  5'- gGUGCUUgacgcGGCGC-CGGCGGCGGGGa-- -3'
miRNA:   3'- -CACGAA-----CCGCGuGUCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 30970 0.71 0.807044
Target:  5'- -cGCUcGGCaCGCAGCAGCAGcugcgGAUCg -3'
miRNA:   3'- caCGAaCCGcGUGUCGUCGUC-----UUAGa -5'
14622 5' -54 NC_003521.1 + 31420 0.71 0.815865
Target:  5'- aUGC-UGGCGUGCAGCAgGCGGAu--- -3'
miRNA:   3'- cACGaACCGCGUGUCGU-CGUCUuaga -5'
14622 5' -54 NC_003521.1 + 99865 0.71 0.836327
Target:  5'- -aGC-UGGCGCAUGGCGGCcaccgucuccauguaGGggUCg -3'
miRNA:   3'- caCGaACCGCGUGUCGUCG---------------UCuuAGa -5'
14622 5' -54 NC_003521.1 + 167408 0.7 0.847768
Target:  5'- cGUGCaggucggggaagUGGCgGCGCAGCAGguGGAUg- -3'
miRNA:   3'- -CACGa-----------ACCG-CGUGUCGUCguCUUAga -5'
14622 5' -54 NC_003521.1 + 75204 0.7 0.849371
Target:  5'- cGUGUUcaccgUGGUGCACGGaCAGCcuGGAUCUc -3'
miRNA:   3'- -CACGA-----ACCGCGUGUC-GUCGu-CUUAGA- -5'
14622 5' -54 NC_003521.1 + 104814 0.7 0.864953
Target:  5'- cGUGCa-GGCGUACAgcgaguGCAGCuGGAUCUc -3'
miRNA:   3'- -CACGaaCCGCGUGU------CGUCGuCUUAGA- -5'
14622 5' -54 NC_003521.1 + 127881 0.7 0.872428
Target:  5'- aUGCgcgGcGUGCACAGCGGCAccGUCUc -3'
miRNA:   3'- cACGaa-C-CGCGUGUCGUCGUcuUAGA- -5'
14622 5' -54 NC_003521.1 + 176265 0.69 0.893519
Target:  5'- aUGCgcaggaUGGUGUugaGCAGCAGCAGAcgggcGUCg -3'
miRNA:   3'- cACGa-----ACCGCG---UGUCGUCGUCU-----UAGa -5'
14622 5' -54 NC_003521.1 + 91668 0.69 0.900091
Target:  5'- -gGCUcccUGGCGCAUuccGCAGCGGGcUCc -3'
miRNA:   3'- caCGA---ACCGCGUGu--CGUCGUCUuAGa -5'
14622 5' -54 NC_003521.1 + 176770 0.69 0.900091
Target:  5'- aUGCaaUUGGCGUACAGCcaGGCGGGccAUUUa -3'
miRNA:   3'- cACG--AACCGCGUGUCG--UCGUCU--UAGA- -5'
14622 5' -54 NC_003521.1 + 135780 0.69 0.905803
Target:  5'- -gGCggcagUGGCGCugcgggaggaggaGCAGCGGCGGAGg-- -3'
miRNA:   3'- caCGa----ACCGCG-------------UGUCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 153415 0.69 0.906426
Target:  5'- gGUGCgccaccGGCGUgguCAGCAGCAGccGGUCg -3'
miRNA:   3'- -CACGaa----CCGCGu--GUCGUCGUC--UUAGa -5'
14622 5' -54 NC_003521.1 + 181450 0.69 0.912522
Target:  5'- aGUGCUgcgcGGCGUcCAGCGGCuGGcgCg -3'
miRNA:   3'- -CACGAa---CCGCGuGUCGUCGuCUuaGa -5'
14622 5' -54 NC_003521.1 + 178377 0.69 0.912522
Target:  5'- cUGCUUGGCGUAggcgUAGC-GCAGGaaGUCg -3'
miRNA:   3'- cACGAACCGCGU----GUCGuCGUCU--UAGa -5'
14622 5' -54 NC_003521.1 + 135747 0.69 0.912522
Target:  5'- cUGCggUGGUG-GCGGCGGUGGGAUCg -3'
miRNA:   3'- cACGa-ACCGCgUGUCGUCGUCUUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.