miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 5' -54 NC_003521.1 + 59638 0.68 0.939378
Target:  5'- -gGCUcgcaGGCGUugGuGCGGCAGAcgCUg -3'
miRNA:   3'- caCGAa---CCGCGugU-CGUCGUCUuaGA- -5'
14622 5' -54 NC_003521.1 + 61279 0.68 0.918379
Target:  5'- cUGCUUGGCGCugAGCcGCGc----- -3'
miRNA:   3'- cACGAACCGCGugUCGuCGUcuuaga -5'
14622 5' -54 NC_003521.1 + 46636 0.68 0.923993
Target:  5'- -gGCgguagacGGCGU-CGGCGGCGGGAUCg -3'
miRNA:   3'- caCGaa-----CCGCGuGUCGUCGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 53414 0.68 0.923993
Target:  5'- -gGCgucgGGCGcCACcgAGCAGCGGAagGUCUc -3'
miRNA:   3'- caCGaa--CCGC-GUG--UCGUCGUCU--UAGA- -5'
14622 5' -54 NC_003521.1 + 67812 0.68 0.928309
Target:  5'- cGUGCUccaaagcauccGCGUGCAGCGGCAGGAa-- -3'
miRNA:   3'- -CACGAac---------CGCGUGUCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 124667 0.68 0.929364
Target:  5'- cGUGaaggUGGCGuCGCGGUAGguGAugGUCUu -3'
miRNA:   3'- -CACga--ACCGC-GUGUCGUCguCU--UAGA- -5'
14622 5' -54 NC_003521.1 + 71568 0.68 0.934492
Target:  5'- -cGCcuuuUUGGCGUACAguucgcGCAGCAGGuUCUc -3'
miRNA:   3'- caCG----AACCGCGUGU------CGUCGUCUuAGA- -5'
14622 5' -54 NC_003521.1 + 395 0.68 0.939378
Target:  5'- uGUGC-UGGCGCGCGGCugugacuGCAGc---- -3'
miRNA:   3'- -CACGaACCGCGUGUCGu------CGUCuuaga -5'
14622 5' -54 NC_003521.1 + 32141 0.68 0.939378
Target:  5'- -gGCgcGGUGCACcaAGCGGCGGAAg-- -3'
miRNA:   3'- caCGaaCCGCGUG--UCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 153415 0.69 0.906426
Target:  5'- gGUGCgccaccGGCGUgguCAGCAGCAGccGGUCg -3'
miRNA:   3'- -CACGaa----CCGCGu--GUCGUCGUC--UUAGa -5'
14622 5' -54 NC_003521.1 + 135780 0.69 0.905803
Target:  5'- -gGCggcagUGGCGCugcgggaggaggaGCAGCGGCGGAGg-- -3'
miRNA:   3'- caCGa----ACCGCG-------------UGUCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 91668 0.69 0.900091
Target:  5'- -gGCUcccUGGCGCAUuccGCAGCGGGcUCc -3'
miRNA:   3'- caCGA---ACCGCGUGu--CGUCGUCUuAGa -5'
14622 5' -54 NC_003521.1 + 70225 0.78 0.44084
Target:  5'- -cGCUUGGCGCGCAGCagggcuaGGCAGGGc-- -3'
miRNA:   3'- caCGAACCGCGUGUCG-------UCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 124950 0.77 0.508055
Target:  5'- cGUGggUGG-GCACGuGCAGCAGGAUCUg -3'
miRNA:   3'- -CACgaACCgCGUGU-CGUCGUCUUAGA- -5'
14622 5' -54 NC_003521.1 + 199644 0.72 0.760702
Target:  5'- uUGCagcaGGCagaGCAGCAGCAGAGUCg -3'
miRNA:   3'- cACGaa--CCGcg-UGUCGUCGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 30970 0.71 0.807044
Target:  5'- -cGCUcGGCaCGCAGCAGCAGcugcgGAUCg -3'
miRNA:   3'- caCGAaCCGcGUGUCGUCGUC-----UUAGa -5'
14622 5' -54 NC_003521.1 + 31420 0.71 0.815865
Target:  5'- aUGC-UGGCGUGCAGCAgGCGGAu--- -3'
miRNA:   3'- cACGaACCGCGUGUCGU-CGUCUuaga -5'
14622 5' -54 NC_003521.1 + 99865 0.71 0.836327
Target:  5'- -aGC-UGGCGCAUGGCGGCcaccgucuccauguaGGggUCg -3'
miRNA:   3'- caCGaACCGCGUGUCGUCG---------------UCuuAGa -5'
14622 5' -54 NC_003521.1 + 127881 0.7 0.872428
Target:  5'- aUGCgcgGcGUGCACAGCGGCAccGUCUc -3'
miRNA:   3'- cACGaa-C-CGCGUGUCGUCGUcuUAGA- -5'
14622 5' -54 NC_003521.1 + 176770 0.69 0.900091
Target:  5'- aUGCaaUUGGCGUACAGCcaGGCGGGccAUUUa -3'
miRNA:   3'- cACG--AACCGCGUGUCG--UCGUCU--UAGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.