miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 5' -54 NC_003521.1 + 395 0.68 0.939378
Target:  5'- uGUGC-UGGCGCGCGGCugugacuGCAGc---- -3'
miRNA:   3'- -CACGaACCGCGUGUCGu------CGUCuuaga -5'
14622 5' -54 NC_003521.1 + 7446 0.66 0.970045
Target:  5'- -cGC--GGCGCACAGCAccacGCGGGAc-- -3'
miRNA:   3'- caCGaaCCGCGUGUCGU----CGUCUUaga -5'
14622 5' -54 NC_003521.1 + 14432 0.68 0.93399
Target:  5'- cGUGacgUGGUGCACAcggcccuGCGGCGGcGUCa -3'
miRNA:   3'- -CACga-ACCGCGUGU-------CGUCGUCuUAGa -5'
14622 5' -54 NC_003521.1 + 26874 0.66 0.966994
Target:  5'- -aGCUcuccuugaUGGCGCGgAGCAGguGAccgccGUCc -3'
miRNA:   3'- caCGA--------ACCGCGUgUCGUCguCU-----UAGa -5'
14622 5' -54 NC_003521.1 + 30970 0.71 0.807044
Target:  5'- -cGCUcGGCaCGCAGCAGCAGcugcgGAUCg -3'
miRNA:   3'- caCGAaCCGcGUGUCGUCGUC-----UUAGa -5'
14622 5' -54 NC_003521.1 + 31289 0.66 0.972889
Target:  5'- -cGCcgGGCGCauaaccGCGGCAGCGGcgacGGUCa -3'
miRNA:   3'- caCGaaCCGCG------UGUCGUCGUC----UUAGa -5'
14622 5' -54 NC_003521.1 + 31420 0.71 0.815865
Target:  5'- aUGC-UGGCGUGCAGCAgGCGGAu--- -3'
miRNA:   3'- cACGaACCGCGUGUCGU-CGUCUuaga -5'
14622 5' -54 NC_003521.1 + 32141 0.68 0.939378
Target:  5'- -gGCgcGGUGCACcaAGCGGCGGAAg-- -3'
miRNA:   3'- caCGaaCCGCGUG--UCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 33951 0.69 0.912522
Target:  5'- cGUGCgcGGCGaGCAGCuggAGCGGAGUUc -3'
miRNA:   3'- -CACGaaCCGCgUGUCG---UCGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 36979 0.66 0.972889
Target:  5'- gGUGCUcGGCGgcgacaucCGCGacgagggcgucGCGGCGGAGUCa -3'
miRNA:   3'- -CACGAaCCGC--------GUGU-----------CGUCGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 40717 0.68 0.939377
Target:  5'- uGUGC-UGGCGCGCGGCugugacuGCAGc---- -3'
miRNA:   3'- -CACGaACCGCGUGUCGu------CGUCuuaga -5'
14622 5' -54 NC_003521.1 + 46636 0.68 0.923993
Target:  5'- -gGCgguagacGGCGU-CGGCGGCGGGAUCg -3'
miRNA:   3'- caCGaa-----CCGCGuGUCGUCGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 47659 0.67 0.956536
Target:  5'- -aGCU--GCGCaacaGCAGCAGCAGAcgCc -3'
miRNA:   3'- caCGAacCGCG----UGUCGUCGUCUuaGa -5'
14622 5' -54 NC_003521.1 + 49202 0.68 0.923992
Target:  5'- -cGCUUcgccGCGCACAGCaaacAGCAGAAgUCa -3'
miRNA:   3'- caCGAAc---CGCGUGUCG----UCGUCUU-AGa -5'
14622 5' -54 NC_003521.1 + 49894 0.67 0.956536
Target:  5'- cGUGCgugUGGCG-ACGGCAGCc--AUCUu -3'
miRNA:   3'- -CACGa--ACCGCgUGUCGUCGucuUAGA- -5'
14622 5' -54 NC_003521.1 + 53414 0.68 0.923993
Target:  5'- -gGCgucgGGCGcCACcgAGCAGCGGAagGUCUc -3'
miRNA:   3'- caCGaa--CCGC-GUG--UCGUCGUCU--UAGA- -5'
14622 5' -54 NC_003521.1 + 59638 0.68 0.939378
Target:  5'- -gGCUcgcaGGCGUugGuGCGGCAGAcgCUg -3'
miRNA:   3'- caCGAa---CCGCGugU-CGUCGUCUuaGA- -5'
14622 5' -54 NC_003521.1 + 61279 0.68 0.918379
Target:  5'- cUGCUUGGCGCugAGCcGCGc----- -3'
miRNA:   3'- cACGAACCGCGugUCGuCGUcuuaga -5'
14622 5' -54 NC_003521.1 + 67812 0.68 0.928309
Target:  5'- cGUGCUccaaagcauccGCGUGCAGCGGCAGGAa-- -3'
miRNA:   3'- -CACGAac---------CGCGUGUCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 70225 0.78 0.44084
Target:  5'- -cGCUUGGCGCGCAGCagggcuaGGCAGGGc-- -3'
miRNA:   3'- caCGAACCGCGUGUCG-------UCGUCUUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.