miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 5' -54 NC_003521.1 + 228982 0.66 0.977983
Target:  5'- gGUGCgcgggcGGCGCAggacCGGCAGCAcGGAgCUa -3'
miRNA:   3'- -CACGaa----CCGCGU----GUCGUCGU-CUUaGA- -5'
14622 5' -54 NC_003521.1 + 224887 1.07 0.007314
Target:  5'- gGUGCUUGGCGCACAGCAGCAGAAUCUc -3'
miRNA:   3'- -CACGAACCGCGUGUCGUCGUCUUAGA- -5'
14622 5' -54 NC_003521.1 + 223183 0.67 0.947999
Target:  5'- gGUGC-UGGCGUACGuagcuccGCAGCgcgucGGggUCg -3'
miRNA:   3'- -CACGaACCGCGUGU-------CGUCG-----UCuuAGa -5'
14622 5' -54 NC_003521.1 + 214562 0.66 0.970045
Target:  5'- gGUGCcUGGgGUGCAGCAGCGc----- -3'
miRNA:   3'- -CACGaACCgCGUGUCGUCGUcuuaga -5'
14622 5' -54 NC_003521.1 + 212108 0.66 0.966993
Target:  5'- cGUGCgccaccaucUGGCGCACGGUcggacucuGCAGggUg- -3'
miRNA:   3'- -CACGa--------ACCGCGUGUCGu-------CGUCuuAga -5'
14622 5' -54 NC_003521.1 + 199644 0.72 0.760702
Target:  5'- uUGCagcaGGCagaGCAGCAGCAGAGUCg -3'
miRNA:   3'- cACGaa--CCGcg-UGUCGUCGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 199599 0.68 0.939377
Target:  5'- aGUGC-UGGuUGCugAGCAcgaugaaggGCAGGAUCg -3'
miRNA:   3'- -CACGaACC-GCGugUCGU---------CGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 197879 0.67 0.963728
Target:  5'- -cGCUgGGCuGCagGCGGCAGCGGAuguugcucGUCa -3'
miRNA:   3'- caCGAaCCG-CG--UGUCGUCGUCU--------UAGa -5'
14622 5' -54 NC_003521.1 + 197651 0.68 0.934492
Target:  5'- -cGCggUGGCGCucguGCGGCAGCAGc---- -3'
miRNA:   3'- caCGa-ACCGCG----UGUCGUCGUCuuaga -5'
14622 5' -54 NC_003521.1 + 197262 0.72 0.770239
Target:  5'- gGUGCUUgacgcGGCGC-CGGCGGCGGGGa-- -3'
miRNA:   3'- -CACGAA-----CCGCGuGUCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 193153 0.66 0.970045
Target:  5'- cGUGUcgucGGCGCACAGCaucucaggagccGGCGGGAg-- -3'
miRNA:   3'- -CACGaa--CCGCGUGUCG------------UCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 192222 0.66 0.966993
Target:  5'- cGUGCUgacGGUGCACGGagugaCAGCGGGuugCa -3'
miRNA:   3'- -CACGAa--CCGCGUGUC-----GUCGUCUua-Ga -5'
14622 5' -54 NC_003521.1 + 190533 0.66 0.972889
Target:  5'- -aGCgaGGUGCgGCGGCAGCAGcggCg -3'
miRNA:   3'- caCGaaCCGCG-UGUCGUCGUCuuaGa -5'
14622 5' -54 NC_003521.1 + 183456 0.67 0.963728
Target:  5'- -cGCccUGGCGCgucACGGCGGCGG--UCUg -3'
miRNA:   3'- caCGa-ACCGCG---UGUCGUCGUCuuAGA- -5'
14622 5' -54 NC_003521.1 + 181450 0.69 0.912522
Target:  5'- aGUGCUgcgcGGCGUcCAGCGGCuGGcgCg -3'
miRNA:   3'- -CACGAa---CCGCGuGUCGUCGuCUuaGa -5'
14622 5' -54 NC_003521.1 + 178377 0.69 0.912522
Target:  5'- cUGCUUGGCGUAggcgUAGC-GCAGGaaGUCg -3'
miRNA:   3'- cACGAACCGCGU----GUCGuCGUCU--UAGa -5'
14622 5' -54 NC_003521.1 + 176770 0.69 0.900091
Target:  5'- aUGCaaUUGGCGUACAGCcaGGCGGGccAUUUa -3'
miRNA:   3'- cACG--AACCGCGUGUCG--UCGUCU--UAGA- -5'
14622 5' -54 NC_003521.1 + 176265 0.69 0.893519
Target:  5'- aUGCgcaggaUGGUGUugaGCAGCAGCAGAcgggcGUCg -3'
miRNA:   3'- cACGa-----ACCGCG---UGUCGUCGUCU-----UAGa -5'
14622 5' -54 NC_003521.1 + 175442 0.66 0.970045
Target:  5'- cGUGCUcGGCGUACgaucGGCGGCGcgccGUCUc -3'
miRNA:   3'- -CACGAaCCGCGUG----UCGUCGUcu--UAGA- -5'
14622 5' -54 NC_003521.1 + 168273 0.66 0.966994
Target:  5'- -cGCUgaucUGGaucuGCACGGCcGUAGAGUCg -3'
miRNA:   3'- caCGA----ACCg---CGUGUCGuCGUCUUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.