miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 5' -54 NC_003521.1 + 71568 0.68 0.934492
Target:  5'- -cGCcuuuUUGGCGUACAguucgcGCAGCAGGuUCUc -3'
miRNA:   3'- caCG----AACCGCGUGU------CGUCGUCUuAGA- -5'
14622 5' -54 NC_003521.1 + 71857 0.68 0.934492
Target:  5'- -cGCgucGGCG-ACAGCAGCGGGAg-- -3'
miRNA:   3'- caCGaa-CCGCgUGUCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 72637 0.66 0.977983
Target:  5'- cGUGC-UGGCGgGcCAGCAGCuc-AUCa -3'
miRNA:   3'- -CACGaACCGCgU-GUCGUCGucuUAGa -5'
14622 5' -54 NC_003521.1 + 74891 0.66 0.966993
Target:  5'- -cGCUgcuGCGCgagacggugGCGGCGGUGGAGUCg -3'
miRNA:   3'- caCGAac-CGCG---------UGUCGUCGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 75204 0.7 0.849371
Target:  5'- cGUGUUcaccgUGGUGCACGGaCAGCcuGGAUCUc -3'
miRNA:   3'- -CACGA-----ACCGCGUGUC-GUCGu-CUUAGA- -5'
14622 5' -54 NC_003521.1 + 84753 0.67 0.956536
Target:  5'- uUGCUcgGGCGCgGCGGCGGCGacGUUg -3'
miRNA:   3'- cACGAa-CCGCG-UGUCGUCGUcuUAGa -5'
14622 5' -54 NC_003521.1 + 91668 0.69 0.900091
Target:  5'- -gGCUcccUGGCGCAUuccGCAGCGGGcUCc -3'
miRNA:   3'- caCGA---ACCGCGUGu--CGUCGUCUuAGa -5'
14622 5' -54 NC_003521.1 + 92014 0.67 0.952599
Target:  5'- -gGCgaGGCGCggcgGCGGCGGCGGuggGUCc -3'
miRNA:   3'- caCGaaCCGCG----UGUCGUCGUCu--UAGa -5'
14622 5' -54 NC_003521.1 + 96529 0.67 0.956536
Target:  5'- -cGCagcGCGUGCGGCAGCAgcGAGUCg -3'
miRNA:   3'- caCGaacCGCGUGUCGUCGU--CUUAGa -5'
14622 5' -54 NC_003521.1 + 98210 0.68 0.939377
Target:  5'- uUGCUgucGGCGgGCAGCGGCgugGGAggCg -3'
miRNA:   3'- cACGAa--CCGCgUGUCGUCG---UCUuaGa -5'
14622 5' -54 NC_003521.1 + 98831 0.67 0.948429
Target:  5'- cUGCUUGGCGCgggccagcucccGCuGCAGCuccuGAcgCUc -3'
miRNA:   3'- cACGAACCGCG------------UGuCGUCGu---CUuaGA- -5'
14622 5' -54 NC_003521.1 + 99294 0.66 0.970045
Target:  5'- -gGCUguagagGGCGCAgAGCAGgCAG-GUCc -3'
miRNA:   3'- caCGAa-----CCGCGUgUCGUC-GUCuUAGa -5'
14622 5' -54 NC_003521.1 + 99865 0.71 0.836327
Target:  5'- -aGC-UGGCGCAUGGCGGCcaccgucuccauguaGGggUCg -3'
miRNA:   3'- caCGaACCGCGUGUCGUCG---------------UCuuAGa -5'
14622 5' -54 NC_003521.1 + 103497 0.66 0.975533
Target:  5'- -cGCUggcgaaagGGCGagccCAGCAGCAGGcgCg -3'
miRNA:   3'- caCGAa-------CCGCgu--GUCGUCGUCUuaGa -5'
14622 5' -54 NC_003521.1 + 104151 0.68 0.923992
Target:  5'- cUGCUcGGUGCucugcgGCGGCGGCGcGggUCg -3'
miRNA:   3'- cACGAaCCGCG------UGUCGUCGU-CuuAGa -5'
14622 5' -54 NC_003521.1 + 104814 0.7 0.864953
Target:  5'- cGUGCa-GGCGUACAgcgaguGCAGCuGGAUCUc -3'
miRNA:   3'- -CACGaaCCGCGUGU------CGUCGuCUUAGA- -5'
14622 5' -54 NC_003521.1 + 113141 0.68 0.923992
Target:  5'- cGUGCU-GGUGCACGGCAacaCGGAcgCc -3'
miRNA:   3'- -CACGAaCCGCGUGUCGUc--GUCUuaGa -5'
14622 5' -54 NC_003521.1 + 119114 0.67 0.952599
Target:  5'- cGUGuCUaaccuaucgUGG-GCGCGGCAGCAGAAc-- -3'
miRNA:   3'- -CAC-GA---------ACCgCGUGUCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 119593 0.66 0.975533
Target:  5'- -cGCUgGGCG-GCGGguGCAGcGUCUc -3'
miRNA:   3'- caCGAaCCGCgUGUCguCGUCuUAGA- -5'
14622 5' -54 NC_003521.1 + 121217 0.66 0.977983
Target:  5'- -cGCgcagGGCGCGCAGCucCAGGAa-- -3'
miRNA:   3'- caCGaa--CCGCGUGUCGucGUCUUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.