miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 5' -54 NC_003521.1 + 197262 0.72 0.770239
Target:  5'- gGUGCUUgacgcGGCGC-CGGCGGCGGGGa-- -3'
miRNA:   3'- -CACGAA-----CCGCGuGUCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 98210 0.68 0.939377
Target:  5'- uUGCUgucGGCGgGCAGCGGCgugGGAggCg -3'
miRNA:   3'- cACGAa--CCGCgUGUCGUCG---UCUuaGa -5'
14622 5' -54 NC_003521.1 + 98831 0.67 0.948429
Target:  5'- cUGCUUGGCGCgggccagcucccGCuGCAGCuccuGAcgCUc -3'
miRNA:   3'- cACGAACCGCG------------UGuCGUCGu---CUuaGA- -5'
14622 5' -54 NC_003521.1 + 72637 0.66 0.977983
Target:  5'- cGUGC-UGGCGgGcCAGCAGCuc-AUCa -3'
miRNA:   3'- -CACGaACCGCgU-GUCGUCGucuUAGa -5'
14622 5' -54 NC_003521.1 + 176265 0.69 0.893519
Target:  5'- aUGCgcaggaUGGUGUugaGCAGCAGCAGAcgggcGUCg -3'
miRNA:   3'- cACGa-----ACCGCG---UGUCGUCGUCU-----UAGa -5'
14622 5' -54 NC_003521.1 + 135747 0.69 0.912522
Target:  5'- cUGCggUGGUG-GCGGCGGUGGGAUCg -3'
miRNA:   3'- cACGa-ACCGCgUGUCGUCGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 181450 0.69 0.912522
Target:  5'- aGUGCUgcgcGGCGUcCAGCGGCuGGcgCg -3'
miRNA:   3'- -CACGAa---CCGCGuGUCGUCGuCUuaGa -5'
14622 5' -54 NC_003521.1 + 33951 0.69 0.912522
Target:  5'- cGUGCgcGGCGaGCAGCuggAGCGGAGUUc -3'
miRNA:   3'- -CACGaaCCGCgUGUCG---UCGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 113141 0.68 0.923992
Target:  5'- cGUGCU-GGUGCACGGCAacaCGGAcgCc -3'
miRNA:   3'- -CACGAaCCGCGUGUCGUc--GUCUuaGa -5'
14622 5' -54 NC_003521.1 + 40717 0.68 0.939377
Target:  5'- uGUGC-UGGCGCGCGGCugugacuGCAGc---- -3'
miRNA:   3'- -CACGaACCGCGUGUCGu------CGUCuuaga -5'
14622 5' -54 NC_003521.1 + 197651 0.68 0.934492
Target:  5'- -cGCggUGGCGCucguGCGGCAGCAGc---- -3'
miRNA:   3'- caCGa-ACCGCG----UGUCGUCGUCuuaga -5'
14622 5' -54 NC_003521.1 + 104151 0.68 0.923992
Target:  5'- cUGCUcGGUGCucugcgGCGGCGGCGcGggUCg -3'
miRNA:   3'- cACGAaCCGCG------UGUCGUCGU-CuuAGa -5'
14622 5' -54 NC_003521.1 + 167408 0.7 0.847768
Target:  5'- cGUGCaggucggggaagUGGCgGCGCAGCAGguGGAUg- -3'
miRNA:   3'- -CACGa-----------ACCG-CGUGUCGUCguCUUAga -5'
14622 5' -54 NC_003521.1 + 71857 0.68 0.934492
Target:  5'- -cGCgucGGCG-ACAGCAGCGGGAg-- -3'
miRNA:   3'- caCGaa-CCGCgUGUCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 75204 0.7 0.849371
Target:  5'- cGUGUUcaccgUGGUGCACGGaCAGCcuGGAUCUc -3'
miRNA:   3'- -CACGA-----ACCGCGUGUC-GUCGu-CUUAGA- -5'
14622 5' -54 NC_003521.1 + 49202 0.68 0.923992
Target:  5'- -cGCUUcgccGCGCACAGCaaacAGCAGAAgUCa -3'
miRNA:   3'- caCGAAc---CGCGUGUCG----UCGUCUU-AGa -5'
14622 5' -54 NC_003521.1 + 199599 0.68 0.939377
Target:  5'- aGUGC-UGGuUGCugAGCAcgaugaaggGCAGGAUCg -3'
miRNA:   3'- -CACGaACC-GCGugUCGU---------CGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 123161 0.67 0.944023
Target:  5'- gGUGCUgcugcugaggUGGCG-GCGGCGGCGGGGg-- -3'
miRNA:   3'- -CACGA----------ACCGCgUGUCGUCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 104814 0.7 0.864953
Target:  5'- cGUGCa-GGCGUACAgcgaguGCAGCuGGAUCUc -3'
miRNA:   3'- -CACGaaCCGCGUGU------CGUCGuCUUAGA- -5'
14622 5' -54 NC_003521.1 + 178377 0.69 0.912522
Target:  5'- cUGCUUGGCGUAggcgUAGC-GCAGGaaGUCg -3'
miRNA:   3'- cACGAACCGCGU----GUCGuCGUCU--UAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.